Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04085 and BPUM_2452
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:36
# Commandline: needle
# -asequence dna-align/BSNT_04085___spoVID.1.24716.seq
# -bsequence dna-align/BPUM_2452___spoVID.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04085___spoVID-BPUM_2452___spoVID.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04085___spoVID-BPUM_2452___spoVID.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04085___spoVID
# 2: BPUM_2452___spoVID
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1806
# Identity: 925/1806 (51.2%)
# Similarity: 925/1806 (51.2%)
# Gaps: 612/1806 (33.9%)
# Score: 2416.5
#
#
#=======================================
BSNT_04085___ 1 TTGCCGCAAAATCATCGATTGCAATTTTCTGTAGAAGAATCGATCTGTTT 50
|||.|.|||||..|||||||.||.|||||.|||||||||||.||||.|||
BPUM_2452___s 1 TTGTCTCAAAACAATCGATTACAGTTTTCAGTAGAAGAATCCATCTATTT 50
BSNT_04085___ 51 CCAAAAAGGACAGGAAGTTTCTGAACTGCTTTCTATTTCATTAGATCCTG 100
|.|||..|||||||||||...|||.|||||.||||||||..|.|||||||
BPUM_2452___s 51 CAAAAGCGGACAGGAAGTCAGTGAGCTGCTGTCTATTTCTCTCGATCCTG 100
BSNT_04085___ 101 ATATTAGGGTTCAGGAAGTAAATGATTATGTATCAATCATAGGATCGCTT 150
|.|||...|||||.|||||.|||||||||||.||.||.|.|||.||.||.
BPUM_2452___s 101 ACATTCTCGTTCAAGAAGTGAATGATTATGTTTCGATTAGAGGTTCACTC 150
BSNT_04085___ 151 GAACTTACAGGTGAGTACAACATAGATCAAAACAAACATA----CCGAAG 196
||.||.|||||.||.|||||||||.|||||.|..|.| || ..|||.
BPUM_2452___s 151 GAGCTAACAGGAGAATACAACATAAATCAAGAGGAGC-TATTGGGTGAAT 199
BSNT_04085___ 197 AGATTT----------ATACAGATAAGC-GATTTGTTGAACAAGTCAGAA 235
.||.|| |||||||.|||| |||..|.||| |.|||
BPUM_2452___s 200 TGAGTTCCTATGCATCATACAGAGAAGCTGATGAGGTGA--AGGTC---- 243
BSNT_04085___ 236 AGAGAGAGGATGGAAGTGCGGA---ACTGACTCACTGTTTTCCTGTGGAT 282
|||||.||.||.|..||||| .|||..||| .||.||.||.|||
BPUM_2452___s 244 --AGAGAAGACGGGACAGCGGAGCTTCTGCATCA---ATTCCCAGTCGAT 288
BSNT_04085___ 283 ATTACCATTCCGAAAAATAAAGTGAGCCATTTACAGGATGTCTTCGTCTT 332
||.||.|||||.|||||.|||.|.||.||||||.|.|||||.||.||.||
BPUM_2452___s 289 ATCACGATTCCTAAAAACAAAATCAGTCATTTAAATGATGTGTTTGTGTT 338
BSNT_04085___ 333 TATTGACGCATTTGACTATCAATTGACGG--ATTCGCGCATTT--TAACA 378
||||||.||.|||||.||.||..||||.| |.||| ||| |.||.
BPUM_2452___s 339 TATTGATGCGTTTGATTACCAGCTGACAGAAAATCG----TTTGCTCACC 384
BSNT_04085___ 379 ATTCAAGCTGATTTAGCGATCGAAGGGCTTTTGGACGATACGCAAGACAA 428
||||||||||||.|||||||.||.||.|||||.|||||
BPUM_2452___s 385 ATTCAAGCTGATCTAGCGATTGAGGGTCTTTTAGACGA------------ 422
BSNT_04085___ 429 AGAGCCGGAGATACCTTTATATGAAGCTCCTGCGGCATTCAGGGAGGAAG 478
|||.|..|| |.||||.||| |.||
BPUM_2452___s 423 ------GGAAACGCC------TCAAGCGCCT---------------GTAG 445
BSNT_04085___ 479 AGCTTTCAGAGCCGTCGGCA------CATAGTGTAGTAGAAGAACCGGGT 522
|| |||||||..|.| |||.||...|.|||||||...||.
BPUM_2452___s 446 AG------GAGCCGTATGAATTTGTTCATCGTTCTGAAGAAGAATATGGC 489
BSNT_04085___ 523 G-CATCATCGGCAGAGGA--AGCAGTTCTTCAGC------ATGAACCGCC 563
| ||| |.|..|.|| |.||| ||.|||| |||||..||.
BPUM_2452___s 490 GACAT----GACCTATGATTATCAG--CTGCAGCCAGAAGATGAAGAGCA 533
BSNT_04085___ 564 AGCCGAACCGCCAGAACTTTTTATCTCGAAAGCGGGCCTCCGTGAAGAAC 613
||..|||..||.|.|| || .||.||||
BPUM_2452___s 534 AGAAGAAGAGCTACAA-----------GA-------------CGATGAAC 559
BSNT_04085___ 614 TGGAGACAGA--AAAAGCAGAATCTGAGCCGCCTGAATCGGTTGCTTCAG 661
..||||..|| |..|||||| |||.|| |||||
BPUM_2452___s 560 GTGAGATTGATGAGGAGCAGA-----------CTGTAT-------TTCAG 591
BSNT_04085___ 662 AACCAGA----GGCCAGAGAAGATGTGAAAG-AGGAAGAAG--AGTCAGA 704
.|..|.| .|||..|||||| |||| ||||||||| |.|.|||
BPUM_2452___s 592 CATGACACGCGCGCCGAAGAAGA----AAAGCAGGAAGAAGAAATTGAGA 637
BSNT_04085___ 705 -AGAGCTTGCTGTGCCGGAAACGGAGGTTCGTGCTGAATCGGAAACAGAA 753
||||| ||.||.|..||.|| ||| ||.||.|||
BPUM_2452___s 638 TAGAGC-TGGTGAGTAGGGAA--------------GAA---GAGACCGAA 669
BSNT_04085___ 754 GAATCTGAGCCAGAACCTGATCCTTCAGAAATAGAGATTCAAGAGATCGT 803
|||| ||| ||.|||.| || |||.|||
BPUM_2452___s 670 GAAT-------------TGA------AGGAATCG-GA------AGAACGT 693
BSNT_04085___ 804 TAAAGCAAAAAAAGAAACGGCTGAGCCGGCAGCTGCAATAGCGGATGTTC 853
.|.||||||| .|||| |||
BPUM_2452___s 694 ----------GAGGAAACGG-AGAGC---------CAA------------ 711
BSNT_04085___ 854 GTGAAGAAGCAGACTCTCCAGCGGAGACTGAGCTTCGTGAACACGCCGGA 903
|||||||.| |.||||.||
BPUM_2452___s 712 --GAAGAAGTA------------------GCGCTTGGT------------ 729
BSNT_04085___ 904 GCAGAAGAATCGCCTGCTTTG---GAAGCTGAACTTCATTCAGAGACTGT 950
.||||| .||||| ||||||.||.|.|
BPUM_2452___s 730 -------TATCGC--TCTTTGCCTGAAGCTCAAGTGC------------- 757
BSNT_04085___ 951 GATTGCAGAGGAAAAAGAGGAAACAACA------GAGTCTCCTAATCATG 994
|.|||.||.|| ||..|.|||||
BPUM_2452___s 758 -----------------AAGAACCACCATTTTTTGAACCGCCTAA----- 785
BSNT_04085___ 995 AATATGCGCTGCGCCAAGAGGCTC-AAAATGAAGAAGCAGCTCAATCGGA 1043
|||| .|.||||.||||.|..|.| |||
BPUM_2452___s 786 --------------------GCTCTTAGATGAGGAAGAACGTGA---GGA 812
BSNT_04085___ 1044 TCAGGCTGATCCTGCGCTTTGCCAAGAAGAGGCGGAAGCG-GATGAAGCT 1092
||.|.|| ||| ||||.|||||.| || .|||.|
BPUM_2452___s 813 -CACGTTG---------TTT--------GAGGTGGAAGTGAGA-AAAGAT 843
BSNT_04085___ 1093 TTGGAGAGTGTATCAGAGGCCGCTCTCTCCATAGAAGATAGCAG--AGAA 1140
..|||.| ||.|| |||| ||||| ||||
BPUM_2452___s 844 CCGGAAA------------------TCGCC---GAAG--AGCAGGAAGAA 870
BSNT_04085___ 1141 ACAGCTTCAGCTGTA-----TATGTGGAGAATGACAAAGCCGATTTCCAT 1185
|| |.||||||.||| |||.| ||||.|| |||.||
BPUM_2452___s 871 AC-GGTTCAGCCGTATCCGGTATTT---GAATCAC----CCGCTT----- 907
BSNT_04085___ 1186 TTCCATCA-----AAAAACAAGCTCGGAGGAGGCATCTCAAGA-----AG 1225
|||| ||.|..|| ||||||| |||| ||
BPUM_2452___s 908 ----ATCACGTGGAAGAGGAA-----GAGGAGG------AAGAGACGCAG 942
BSNT_04085___ 1226 AATTGCCTGAACCGGCATACCGTACCTTCCTGCCTGAACAAGAAGAGGAG 1275
|| ||| |||.|.||.||..|.|| |
BPUM_2452___s 943 AA-----TGA------------TACGTACCAGCTCGGAC----------G 965
BSNT_04085___ 1276 GATTCTTTTTATTCAGCGCCTAAGCTGCTGGAGGAGGAAGAACAAGAGGA 1325
| |||| |.||||.|||
BPUM_2452___s 966 G-------TTAT-------------------------ATGAACGAGA--- 980
BSNT_04085___ 1326 AGAGAGCTTCGAAATTGAAGTGAGAAAAACACCATCAGCTGAAGAGCCTA 1375
|||..|.|||.| |..|||| ||||||.|||
BPUM_2452___s 981 ----AGCGCCAAAAGT-ATATGAG----------TCAGCTCAAG------ 1009
BSNT_04085___ 1376 AGGAAGAAACACCTTTTCAATCCTTTCAGCTGCCTGAATCTTCTGAGAC- 1424
|.|||||..|| |||.|| || ||||
BPUM_2452___s 1010 AAGAAGAGGCA---TTTGAA---------------GA--------AGACG 1033
BSNT_04085___ 1425 TGAAAGGAAGGAAACGGATGCTGTTCCTAGGGTTGCTCCTGCTGCTGAAA 1474
|||.| ||||||..||.|
BPUM_2452___s 1034 TGAGA-----GAAACGTCTGGT---------------------------- 1050
BSNT_04085___ 1475 CGAAGGAACCTCAAACAAAGGAAAGTGATAATTCTCTTTATTTAACAAAA 1524
|||||.||||||||||||||||||||.
BPUM_2452___s 1051 -----------------------AGTGAGAATTCTCTTTATTTAACAAAG 1077
BSNT_04085___ 1525 CTCTTTACAA---AAGAAGCGGATGAGTTTTCGAGAATGAAAATTTGTAT 1571
||.|||.|.| |.||.|.|||.||.|||||..|.||||||||.|||||
BPUM_2452___s 1078 CTGTTTGCTAAGCAGGAGGAGGAAGATTTTTCTCGCATGAAAATATGTAT 1127
BSNT_04085___ 1572 TGTGCAGCAGGAAGATACGATCGAGCGTTTATGCGAACGGTA-----TGA 1616
.||.|||||.|||||||||.||||.|||.|.||.||.||.|| |||
BPUM_2452___s 1128 AGTTCAGCAAGAAGATACGGTCGATCGTATTTGTGAGCGATATCAGTTGA 1177
BSNT_04085___ 1617 AATTACATCCCAGCAGCTGATCAGGATGAATTCTTTAGCCTTGGATGATG 1666
|..| .||||||||..|..|.|..|||||.|||.|..||||||..|
BPUM_2452___s 1178 ATGT-----GCAGCAGCTTCTTCGCACAAATTCATTATCGGTGGATGCGG 1222
BSNT_04085___ 1667 AATTAAAAGCAGGACAGATTCTCTATATTCCTCAATATAAAAATAGCCAT 1716
|..|..|||.|||.||||||||.|||||||||.|||||.||||.|||.||
BPUM_2452___s 1223 AGCTTGAAGAAGGGCAGATTCTTTATATTCCTGAATATCAAAAAAGCAAT 1272
BSNT_04085___ 1717 GCGTAA 1722
||.|||
BPUM_2452___s 1273 GCCTAA 1278
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