Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04084 and BPUM_2451
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:36
# Commandline: needle
# -asequence dna-align/BSNT_04084___ysxE.1.24716.seq
# -bsequence dna-align/BPUM_2451___ysxE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04084___ysxE-BPUM_2451___ysxE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04084___ysxE-BPUM_2451___ysxE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04084___ysxE
# 2: BPUM_2451___ysxE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1149
# Identity: 668/1149 (58.1%)
# Similarity: 668/1149 (58.1%)
# Gaps: 240/1149 (20.9%)
# Score: 1747.5
#
#
#=======================================
BSNT_04084___ 1 ATGGAAGATACCCAATCGGTTCTTCAGGAATACGGAC-TGACTGCTCAAT 49
.||||.||.|.||||||.||.||..|.||||||||.| ||| .||..|||
BPUM_2451___y 1 GTGGATGAGATCCAATCTGTCCTATACGAATACGGGCTTGA-AGCGGAAT 49
BSNT_04084___ 50 TTATTGAGCCTGTCAGTCCTCTTGTTTGGAAAGTGTATACAGACTACGGC 99
..|||||.||||||||||||..|||....|||||.||||||.|..|.|||
BPUM_2451___y 50 ACATTGAACCTGTCAGTCCTGCTGTCGTCAAAGTATATACAAAGCAGGGC 99
BSNT_04084___ 100 ATATTTGCCCTGAAAAAATTGAAAGAAGGTCGCGGCAAGCATTTTACAGA 149
..|||||||.|.||...|.|.||||...||||....|.|||.||||||||
BPUM_2451___y 100 GCATTTGCCTTAAAGCGAGTAAAAGCCAGTCGACATATGCAGTTTACAGA 149
BSNT_04084___ 150 TCATATGGTGGCGATTGAGGAAAAAGGCTTTCGTTCATTCGTTCCCGTTT 199
.||.|||.|.|...|.||...|||.||||.|||.||.||.||.||..|||
BPUM_2451___y 150 GCAAATGCTTGAACTAGAATCAAAGGGCTATCGCTCTTTTGTGCCGATTT 199
BSNT_04084___ 200 ACAGAACAAATAGCGGTGAGTTTTTCTCAGCAGGCAT--------ACAAT 241
|..|.||.||.||||||...||||||||| ||.||| .||.|
BPUM_2451___y 200 ATCGGACGAAGAGCGGTTCTTTTTTCTCA--AGTCATCGTGAAAGCCAGT 247
BSNT_04084___ 242 ACGGAGATACCTACTATTTAATGCCTTGGCT--CCAATTTGACCAAGAG- 288
||| |.||||||.|.||||||||||| |.|| ||| .|||||
BPUM_2451___y 248 ACG------CATACTATCTGATGCCTTGGCTGACGAA--TGA-AAAGAGA 288
BSNT_04084___ 289 GAAGAACGGGATCAGAAACATGCTTATTTATTTAGAGAAACAGCCCGTCT 338
|||||.|.|||..|.|||||||..|||||||||..|||.|..||..|.||
BPUM_2451___y 289 GAAGAGCAGGACGATAAACATGAATATTTATTTCAAGAGATTGCAAGACT 338
BSNT_04084___ 339 TCACGAGAGAACCGCGCAGGAACTAAAGGTTAGACGTGAT---------- 378
|||..||.|.||| ||.|||||
BPUM_2451___y 339 TCATAAGCGGACC-------------------GAAGTGATGATGGATATC 369
BSNT_04084___ 379 ---------GAGATTGAA-CGTTATTACGGGCAAACGAAAAAAAAGTGGG 418
|||||.||| || .|.|||...||||..||.|..||.||||
BPUM_2451___y 370 ACAGAGCAAGAGATCGAAGCG-CACTACACACAAATCAAGACCAAATGGG 418
BSNT_04084___ 419 AACAAGATAAAATTTTCTATGAGCAGTTTGTGGATAGAGCGGAGAAGGAG 468
||..|||.|||....|.|||||.|.||| .|||||||||..| |||
BPUM_2451___y 419 AAACAGAGAAAGACATGTATGAACGGTT----CATAGAGCGGGCA--GAG 462
BSNT_04084___ 469 ------TGGTACCTTTCTCCTTTTGAACT-CCAG--GCCATAACCTATTT 509
|||||..|.||.||.|||||||| .|.| ||.|| .|||||
BPUM_2451___y 463 CAAACATGGTATATGTCGCCATTTGAACTGGCTGCTGCGAT---GTATTT 509
BSNT_04084___ 510 TTCAGAAACCATTTCCGC-GGTGAATTTTGCGCTGGAACGGTTGGAGGAC 558
||||||..|.||.||.|| .|.||| |||||.||.|||||..|.||.||.
BPUM_2451___y 510 TTCAGAGGCGATGTCTGCTAGCGAA-TTTGCTCTTGAACGACTAGAAGAT 558
BSNT_04084___ 559 TGGTATG-AGTCTGCAAAGGAA----AAAGA-------CGTTTCAAGGGT 596
|||.||| || |||.||| ||||| |||.|| |.||
BPUM_2451___y 559 TGGCATGAAG-----AAATGAAAGATAAAGAAACAACTCGTGTC--GTGT 601
BSNT_04084___ 597 T--GTAATGAACCACGGCAGCCTGTCTATACACCATTTTCTGTATAATGA 644
| .|.||| ||||| |||||.||.||.||.|||.||||.|||||
BPUM_2451___y 602 TAAATCATG------GGCAG-CTGTCGATTCATCACTTTTTGTACAATGA 644
BSNT_04084___ 645 TGCCGGGACCGGATATTTTACAAACTTCGAAAGAGCATCTGTCGGT---- 690
||..||.||.|||.||||.||.||.||.|| .||||
BPUM_2451___y 645 TGTGGGCACAGGACATTTCACCAATTTTGA-----------GCGGTCTAA 683
BSNT_04084___ 691 -----CCGCCGCAA--AACGACCTGCTCGGCTTTTA------TACAAAAA 727
|||||.|.| .|.||.||.||...|||||| .||
BPUM_2451___y 684 AAAAGCCGCCCCCATTTATGATCTTCTAACCTTTTACTTTCGGAC----- 728
BSNT_04084___ 728 TGTTCAGAGGCTTTCCGAAAGCTTGTCCGGAATG--CGTCGAATGGTTTT 775
|||||.|..||.|||.|...|.|||||.||||| |.|| .|.|||||
BPUM_2451___y 729 -GTTCAAAACCTATCCCACGTCGTGTCCTGAATGCACTTC--CTTGTTTT 775
BSNT_04084___ 776 ATGGATAT-----ACGAAATCATTCCCTTTGCGTGAAGCGGAAG----TC 816
||...||| |.||||| |||.|.||.|| ||||| ||
BPUM_2451___y 776 ATATGTATCAAAAAGGAAAT-----CCTCTTCGGGA---GGAAGAGCTTC 817
BSNT_04084___ 817 AGCCTT--TTTCTCAGCTATATGGCATATCCGGCAGCCATGTACAAGGTG 864
| || |||||.||.||..|.||.|||||| ||||||
BPUM_2451___y 818 A---TTTGTTTCTTAGTTACCTTGCTTATCCG-----------CAAGGT- 852
BSNT_04084___ 865 CTGAACGGTTATCAAACTGGGAAAA---------------GACAGCATGA 899
||| |.|.|.||.|.||||| |.|||.|||
BPUM_2451___y 853 CTG------TTTGATACAGTGAAAACCTATGAAGCAGGCGGGCAGGATG- 895
BSNT_04084___ 900 AAAAGA-GGAA---TGTACACAATTATTAAAGGCTTATTGGCAAATGAAA 945
||| |||| |||..|.|..|.||||..||.||||||||.||||||
BPUM_2451___y 896 ---AGATGGAAAGCTGTCAAGAGCTGTTAAGAGCATATTGGCAGATGAAA 942
BSNT_04084___ 946 AATATAGAGCCGTTTGTGATGAAAATCCATCAGATTGAACAAG--AGAAA 993
|||..|||||||...||.|||||.||.||..|||||||.||.| |||
BPUM_2451___y 943 AATTCAGAGCCGACCGTCATGAAGATTCACGAGATTGAGCAGGCTAGA-- 990
BSNT_04084___ 994 AAATTTCAGGC-TGAAAACG-----AGT-CCACGTCTTAA--------- 1026
.||| ||||.|.| ||| ||.||||.|.|
BPUM_2451___y 991 -------CGGCTTGAAGAAGAACAAAGTGCCTCGTCATCAGCGGAATGA 1032
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