Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04074 and BPUM_2446
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:35
# Commandline: needle
# -asequence dna-align/BSNT_04074___spoIIB.1.24716.seq
# -bsequence dna-align/BPUM_2446___spoIIB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04074___spoIIB-BPUM_2446___spoIIB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04074___spoIIB-BPUM_2446___spoIIB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04074___spoIIB
# 2: BPUM_2446___spoIIB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1134
# Identity: 644/1134 (56.8%)
# Similarity: 644/1134 (56.8%)
# Gaps: 255/1134 (22.5%)
# Score: 1510.5
#
#
#=======================================
BSNT_04074___ 1 TTGAAAAAAAGAAAGAATAAAAAAAACAGTAAAGCCGCAGAAAAAGCCCT 50
.||||||||||..|| ..|||||||| |||..||
BPUM_2446___s 1 GTGAAAAAAAGGCAG--GCAAAAAAAC----------------AAGGGCT 32
BSNT_04074___ 51 CAAGGTGACGATTAATGGAAAAGAAGAGACGGTTTACGAA------CAAG 94
.|||||.|..||||||||.||.|||||.|.|||..|.||| ||..
BPUM_2446___s 33 AAAGGTCAATATTAATGGCAAGGAAGAAATGGTACATGAAGATGATCATC 82
BSNT_04074___ 95 AGACGCCTGAGACAG-AGGCGGATAAAAGCATGACATTTTCAAATTGGGA 143
||.|.|| ||.|||| |.|..|||.|| .||||.|||||.||||||||
BPUM_2446___s 83 AGCCACC-GAAACAGCAAGAAGATCAA---GTGACGTTTTCGAATTGGGA 128
BSNT_04074___ 144 GGAAAAAAGACAGGCAGAACAAGAGGTTGCGGCATCCCAGGAACATCCTG 193
.|||||.|||||..|.|||||.|||...||.||.||.||||||.|||| |
BPUM_2446___s 129 AGAAAAGAGACATTCGGAACAGGAGACAGCCGCTTCTCAGGAAGATCC-G 177
BSNT_04074___ 194 ----------ATGAAGATGAATTCAATTGGGATTCAGAGGAAGA-CAAGG 232
|.|||||.||.|||.|.||||||...|.||..|| ||
BPUM_2446___s 178 TCTAAACCGAAAGAAGAAGATTTCCAGTGGGATGATGCGGCTGATCA--- 224
BSNT_04074___ 233 TGTTTA--AAGAGGACCCAAAAGTTGTTCCTCCTTTTCAAAAGAAAAAAA 280
|.|||| |....||.||||||||.||..|.||||.|||||||||||
BPUM_2446___s 225 TATTTATCATTCTGATCCAAAAGTCGTCACCCCTTATCAAAAGAAAA--- 271
BSNT_04074___ 281 CAAAGC----TTTATGCAAAA-----GGAAAGACCGGGGCTGCCAAACCG 321
||||| ||.|| ||||| |.|||.|.||.|| .||.
BPUM_2446___s 272 -AAAGCTCCTTTGAT-CAAAAGTTCGGTAAAAATCGTGG-------TCCC 312
BSNT_04074___ 322 GTAAAAAGAGTGGCCGCGACGATTGCCTTCGCGGCTGTCATTGGCACTGG 371
.|.||.||||||....|.||.||||..||.||||..||..||||.||.||
BPUM_2446___s 313 TTCAAGAGAGTGATGACAACAATTGTGTTTGCGGTCGTTCTTGGGACAGG 362
BSNT_04074___ 372 ATTAGGGCTATTCGCG----------TTAAACATA--------------T 397
..|.|||.|.||.||| .||||.||| |
BPUM_2446___s 363 TCTCGGGGTGTTTGCGCTTAGTTTAAGTAAAGATAGTACACCAAATCCTT 412
BSNT_04074___ 398 C-GGGGAATAAAGAAGCGTCAGCACCGGCCTCTTTAGAGGAT-------- 438
| ||.|.|.|.|..||.||| .||||.||| ||||
BPUM_2446___s 413 CAGGTGGAGATATCAGTGTC----TCGGCATCT-----GGATCTGGAAAT 453
BSNT_04074___ 439 ---TC-TCTA--------GGCAGCCAAACGGCAAAAGCAGGGGATACTTC 476
|| ||.| |||.|..|..||.|.|||||||| ||||
BPUM_2446___s 454 CAATCATCGATGAAAGCCGGCGGGGATGCGCCGAAAGCAGG---TACT-- 498
BSNT_04074___ 477 AACTGAT-AAACAAACTTCAGGCACAGAA-AAACAAGCGGCGCAAACTGA 524
||.||| ||.|||| |.|||| |||.||| ||| |
BPUM_2446___s 499 -ACAGATGAATCAAA--------AGAGAACAAAGAAG------AAA---A 530
BSNT_04074___ 525 AGGTAC----------ATATAAAACATACGCTGTACAAGCCGGAAAATTT 564
|.||.| .||| .|||.|..|.||||||.||.||.|||||.
BPUM_2446___s 531 AAGTGCCTCTGGCAGTTTAT-CAACCTTTGTTGTACAGGCTGGGAAATTC 579
BSNT_04074___ 565 TCAAATGAAAAGGGTGCCGAAACGTTAAC--AGAACAATTGACCG---AA 609
||...||||||.||.||.|| |.|| || |||.|.| ||
BPUM_2446___s 580 TCTTCTGAAAAAGGAGCAGA-----TGACTTAG-----TTGGCAGTTTAA 619
BSNT_04074___ 610 AA-----AGGATATTCCGCCGTGTCA---CTGTCAAAGGATGACGGGTAT 651
|| ||||||| ||.|.|..| .|.||.|.||||||.||||||
BPUM_2446___s 620 AAGATGCAGGATAT---GCAGGGAAAAAGATTTCCATGGATGATGGGTAT 666
BSNT_04074___ 652 ACGTATGTCATCGC-GGGCTTAGCCAGTGATAAGGATGTCTCACAGCAGT 700
|||||.||.|| ||.||| ||.|..||..|||..||..|| |||..|
BPUM_2446___s 667 ---TATGTTATTGCTGGACTT-GCGACAGAGCAGGGGGTGACA-AGCGCT 711
BSNT_04074___ 701 -TAGGACAGGTTTTAATCGA-CAGTGATTTTGAAGCCTGGGGAGGCAAGG 748
||||..||...||.||.|| ||| .|.|||||.||.||||||||.||.|
BPUM_2446___s 712 GTAGGGAAGAAATTGATTGATCAG-CACTTTGAGGCATGGGGAGGAAAAG 760
BSNT_04074___ 749 AGCTTTCCTTATCAATAGAGTCAGATATGA-CAGATTCTTTTA--AGGAA 795
||||.||.|| ||| ||.|.|.| |.|| |.||.|..|||| ||.||
BPUM_2446___s 761 AGCTCTCATT-TCA--AGTGCCGG--ACGAGCTGACTAATTTAATAGAAA 805
BSNT_04074___ 796 A--CAGCGGAGCTTGCAGCAAAGGCGATTCTCGGCGAAGA----CATTAC 839
| ||.|.|...|..||.|.||.|.||||...|||||.|| .|| |
BPUM_2446___s 806 AGGCATCTGTATTATCATCCAAAGTGATTGCAGGCGATGAAGTGGAT--C 853
BSNT_04074___ 840 AAAAGCGAGTGTAG-AGAAAATAGAAAAGTCT---CTTGGTGAAACAAAA 885
|||||..||||..| ||..||| .||| |||| |||
BPUM_2446___s 854 AAAAGGAAGTGACGCAGCTAAT------TTCTGAGCTTG--------AAA 889
BSNT_04074___ 886 GCGTCAGAAACAGGAGA-------GAAAAAAGCGATTTTGC---AGGCT- 924
|.|.|| ||||||..|| |..|||||| |.||||| |.|||
BPUM_2446___s 890 GTGCCA-AAACAGAGGACGCACCGGCTAAAAGC-AGTTTGCTGAAAGCTG 937
BSNT_04074___ 925 TTAAAGGAATTAGAGGATCCAAGTGCTGAAGCCGGGTGGAAGGCTCAGCA 974
||.|| ..||||.|.||.||||.|||||||..|||.|||||..|||||||
BPUM_2446___s 938 TTCAA-CTATTAAATGACCCAACTGCTGAAAACGGCTGGAAATCTCAGCA 986
BSNT_04074___ 975 -GCAGCTGTTAGCCGTCGTAAAATAA-------- 999
||| ||| |.|..|.||.|||
BPUM_2446___s 987 GGCA----TTA--CTTGATCAATTAAATACGTAA 1014
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