Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04068 and BPUM_2442
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:34
# Commandline: needle
# -asequence dna-align/BSNT_04068___mreC.1.24716.seq
# -bsequence dna-align/BPUM_2442___mreC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04068___mreC-BPUM_2442___mreC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04068___mreC-BPUM_2442___mreC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04068___mreC
# 2: BPUM_2442___mreC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 937
# Identity: 627/937 (66.9%)
# Similarity: 627/937 (66.9%)
# Gaps: 101/937 (10.8%)
# Score: 1973.0
#
#
#=======================================
BSNT_04068___ 1 ATGCC------------GAATAAGCGGTTAATGCTATTACTTCTGTGTAT 38
||||| ||||||..|.||||||.|..|.|||.|.|||.|
BPUM_2442___m 1 ATGCCGCAGTTTTTTATGAATAAAAGATTAATGTTGCTCCTTGTCTGTGT 50
BSNT_04068___ 39 TATCATATTGGTGGCTATGATTGGATTTTCGCTGAAGGGCGGCCGCAATA 88
.|||.||.|||||||.||||||||.|||||..||||..|||||.|...|.
BPUM_2442___m 51 CATCGTACTGGTGGCCATGATTGGTTTTTCAGTGAAAAGCGGCAGAGGTG 100
BSNT_04068___ 89 CCACCTGGCCTGAGAAAGTGATCGGCGATACGACGGGAGTATTTCAAAAT 138
|..|.|||||.||.|||.|..|.||.||||||||.||..|.||||||..|
BPUM_2442___m 101 CTTCATGGCCGGAAAAATTAGTGGGGGATACGACAGGCTTTTTTCAAGGT 150
BSNT_04068___ 139 ATTTTTCATACGCCTGCCGAATTTTTTGCAGGAATATTTGAGAACAT-CA 187
.|.|||||||..||..|..|||||.||||.||.||.|.||.||||.| ||
BPUM_2442___m 151 GTCTTTCATAAACCATCACAATTTATTGCCGGTATGTATGGGAACGTACA 200
BSNT_04068___ 188 ATGATTTAAAAAACACATACAAAGAAAACGAGCGTCTAAGAGAAAAACTT 237
| ||||||||.|||||||||.|.||||||||.|||||..||.||||||||
BPUM_2442___m 201 A-GATTTAAAGAACACATACGATGAAAACGAACGTCTTCGAAAAAAACTT 249
BSNT_04068___ 238 GACGGACAGACACAATATGAAGCCAAGCTTCAAGAGCTTGAAGAAGAAAA 287
||.|||||.||.||||||||.||.||.||||||||.||.|||||.||.||
BPUM_2442___m 250 GATGGACAAACTCAATATGAGGCGAAACTTCAAGAACTAGAAGATGAGAA 299
BSNT_04068___ 288 C-AAATCCTTGCGTGACGAGCTTGGCCATGTCAAATCGATTAAAGATTAC 336
| |||..||| ||..|..||||.||..||||.||.||.|||...|||||.
BPUM_2442___m 300 CAAAAAGCTT-CGCAAGCAGCTCGGTTATGTGAACTCTATTCGTGATTAT 348
BSNT_04068___ 337 AAGCCGATTTTAGCAACGGTCATCGCCAGAA-----GCCCTGATAATTGG 381
|.|||.|||.||.|||||||.|||||.|||| .|||| ||||
BPUM_2442___m 349 ACGCCAATTCTATCAACGGTTATCGCGAGAAACCCGTCCCT-----TTGG 393
BSNT_04068___ 382 GCCAAACAG----GTCACCATTAACAAGGGGACTCAGCAAAACGTAGCGA 427
| |.|| ||||..|||.|.||.||||...|.|||..|||.|..|
BPUM_2442___m 394 G----ATAGCTTTGTCATGATTGATAAAGGGAAAAAACAAGGCGTTGACA 439
BSNT_04068___ 428 AAGATATGGCCGTTACAAACGAAAAAGGCGCATTAATCGGCAAGATCAAA 477
||||||||||.||.|||||.||.|..||.||.|||||.||.||.||..||
BPUM_2442___m 440 AAGATATGGCGGTCACAAATGAGAGTGGTGCGTTAATTGGGAAAATTGAA 489
BSNT_04068___ 478 AGCTCCGGA----CTTAACAATTTTACGTCTACTGTTCAGCTT-TTAAGC 522
|| .|| ||.|||||||||||.||.||.| |.||.|| .|||||
BPUM_2442___m 490 AG----TGATAAGCTCAACAATTTTACTTCGACAG-TAAGGTTGCTAAGC 534
BSNT_04068___ 523 GATACTGACCGCAATAACAGAGTCGCGACAAAAA--TTTCCGGAAAAAAA 570
..||||||||..|||||.|||.|..|.||.|||| |||.|| |||||
BPUM_2442___m 535 TCTACTGACCAAAATAATAGAATTTCAACGAAAATTTTTGCG---AAAAA 581
BSNT_04068___ 571 GGCAGCAAAG------GCTACGGCTTGATCGAAGGATATGACAAAGAGAA 614
|| |||||| .|.||||..|.||..|.||.|||||||...||||
BPUM_2442___m 582 GG--GCAAAGAAGAACTCAACGGAATTATTAACGGCTATGACAGTAAGAA 629
BSNT_04068___ 615 AAAACGTCTTAAGATGACAAT---TAT---------TGA-GCGTAAGGAT 651
|||| |.|.||||||| ||| ||| ||..|.||
BPUM_2442___m 630 AAAA------ATGCTGACAATGAATATTCTGAAATCTGATGCAGATGG-- 671
BSNT_04068___ 652 AAACAAGACGTGAAAAAAGGCGATCTTATTGAAACATCAGGGACAGGCGG 701
|||.||.||||||||.||||||.||||||||||.||..||||.||
BPUM_2442___m 672 -----AGATGTCAAAAAAGGAGATCTTGTTGAAACATCTGGAGCAGGGGG 716
BSNT_04068___ 702 TGTTTTCCCAGAAGGGCTGACAATCGGTGAAGTGACTGATATCGAGTCAG 751
.||.|||||..||||..||||.||.|||.||||.|.|||.||||||.|||
BPUM_2442___m 717 CGTATTCCCTCAAGGCTTGACGATTGGTAAAGTAAGTGAAATCGAGCCAG 766
BSNT_04068___ 752 ATTCCTATGGACTGACGAAGGTTGCTTATGTAAAACCCGCGGCTGACCT- 800
||...||.||.|||||.|||.|...|||||||.||||.||||||||.||
BPUM_2442___m 767 ATCATTACGGCCTGACAAAGATCATTTATGTAGAACCAGCGGCTGAACTC 816
BSNT_04068___ 801 TACAGATTTAAATAATGTGATCGTTGTTAACCG----TGACGT---GCCG 843
.||| |||||.|....|||||.||.||.||.|| |.|.|| ||.|
BPUM_2442___m 817 AACA-ATTTAGACCGCGTGATTGTGGTGAATCGCAGCTCAAGTACGGCAG 865
BSNT_04068___ 844 A-----CTGTCGAT--ACAGAGGAGGAAGGATCGTGA 873
| |||| || ||..||||||||||.||||||
BPUM_2442___m 866 ATGCATCTGT--ATTGACGAAGGAGGAAGGCTCGTGA 900
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