Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_04063 and BPUM_2439

See Amino acid alignment / Visit BSNT_04063 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:34
# Commandline: needle
#    -asequence dna-align/BSNT_04063___minD.1.24716.seq
#    -bsequence dna-align/BPUM_2439___minD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04063___minD-BPUM_2439___minD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04063___minD-BPUM_2439___minD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04063___minD
# 2: BPUM_2439___minD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 822
# Identity:     603/822 (73.4%)
# Similarity:   603/822 (73.4%)
# Gaps:          33/822 ( 4.0%)
# Score: 2188.0
# 
#
#=======================================

BSNT_04063___      1 TTGGGTGAGGCTATCGTAATAACTTCGGGAAAAGGCGGAGTAGGTAAGAC     50
                     |||||.||||||||.||.||.||.||.|||||||||||.||.||.||.||
BPUM_2439___m      1 TTGGGCGAGGCTATTGTGATTACCTCAGGAAAAGGCGGCGTTGGCAAAAC     50

BSNT_04063___     51 AACAACATCTGCGAACCTCGGTACCGCCTTAGCCATTTTAGGGAAGCGCG    100
                     ||||||||||||.|||.|.||.||.||..||||.|||..||||||....|
BPUM_2439___m     51 AACAACATCTGCAAACTTAGGCACAGCACTAGCAATTCAAGGGAAAAAAG    100

BSNT_04063___    101 TATGCTTAGTAGATACTGATATAGGACTGCGCAACCTTGATGTTGTAATG    150
                     |.||..||||.|||||.|||||.||.||.||.||..|.|||||.||.|||
BPUM_2439___m    101 TGTGTCTAGTTGATACCGATATTGGCCTTCGGAATTTAGATGTCGTGATG    150

BSNT_04063___    151 GGTCTTGAAAATAGAATTATTTACGATCTGGTAGACGTTGTAGAGGGCAG    200
                     ||.|||||.||..|.||||||||||||||.||.||.||.|||||.||.||
BPUM_2439___m    151 GGGCTTGAGAACCGCATTATTTACGATCTAGTCGATGTAGTAGAAGGAAG    200

BSNT_04063___    201 ATGCAAAATGCATCAGGCGCTCGTAAAAGACAAACGTTTCGATGATCTGC    250
                     |||.|||||.|||||||||||.||||||||.||.||||||||.|||||..
BPUM_2439___m    201 ATGTAAAATCCATCAGGCGCTTGTAAAAGATAAGCGTTTCGAGGATCTTT    250

BSNT_04063___    251 TCTATTTAATGCCCGCTGCTCAAACGAGCGATAAGACAGCTGTTGCTCCT    300
                     |.|||.|..|.||.|||||||||||.||||||||.||||||||.|..||.
BPUM_2439___m    251 TGTATCTTTTACCTGCTGCTCAAACAAGCGATAAAACAGCTGTAGAGCCA    300

BSNT_04063___    301 GAACA--------AATTAA---AAACATGGTCCAAGAGCTCAAACAGGAA    339
                     ||.||        ||||||   ||.|||           |.|||||.||.
BPUM_2439___m    301 GAGCAGATCAAAGAATTAATTCAATCAT-----------TGAAACAAGAC    339

BSNT_04063___    340 TTTGACTATGTCATCATAGACTGTCCTGCCGGAATCGAGCAAGGGTACAA    389
                     |||||.||||||.||||.||.||.|||||.|||||.||||||||.|..||
BPUM_2439___m    340 TTTGATTATGTCGTCATTGATTGCCCTGCTGGAATTGAGCAAGGCTTTAA    389

BSNT_04063___    390 AAATGCCGTTTCCGGAGCTGATAAAGCGATTGTGGTCACTACGCCTGAAA    439
                     ||||||.||.||.||.||.|||||.||.|||||.||.||.||||||||.|
BPUM_2439___m    390 AAATGCTGTATCTGGTGCAGATAAGGCAATTGTCGTGACGACGCCTGAGA    439

BSNT_04063___    440 TCTCAGCTGTTCGTGATGCTGACCGTATTATAGGGCTGCTGGAGCAAGAA    489
                     ||||||||||..|.|||||.||||||||.||.||..||.|.||.||||||
BPUM_2439___m    440 TCTCAGCTGTGAGAGATGCCGACCGTATCATTGGCTTGTTAGAACAAGAA    489

BSNT_04063___    490 GAAAATGTTGAACCGCCGCGGCTCGTTGTTAACAGAATCAGAAATCACCT    539
                     |   ||.|.|||||.||.||..|..||||.|||.|.||..|.|..|||.|
BPUM_2439___m    490 G---ATATCGAACCACCTCGTTTGATTGTCAACCGTATTCGTACACACAT    536

BSNT_04063___    540 GATGAAAAACGGTGACACGATGGATATCGACGAAATCGTACAGCATCTGT    589
                     |..|||||..||.||..|.||||||.|.||.|||.|.||.||.||..|.|
BPUM_2439___m    537 GGCGAAAAGTGGCGATTCAATGGATGTGGATGAAGTTGTCCATCACTTAT    586

BSNT_04063___    590 CGATCGATTTGCTCGGAATCGTGGCTGATGATGATGAAGTCATTAAAGCT    639
                     ||||.|||.|.||.||.||.||.||||||||||||||.||.|||||.|||
BPUM_2439___m    587 CGATTGATCTTCTTGGCATTGTTGCTGATGATGATGACGTGATTAAGGCT    636

BSNT_04063___    640 TCCAATCATGGCGAACCGATTGCGATGGACCCTAAAAACCGCGCTTCCAT    689
                     ||.|||.|||||||||||||||..|||||..||||||||...|..||.||
BPUM_2439___m    637 TCAAATAATGGCGAACCGATTGTCATGGATGCTAAAAACAAAGTATCGAT    686

BSNT_04063___    690 TGCATATCGCAATATTGCCCGCCGCATCTTAGGTGAATCTGTTC--CTTT    737
                     |||.|||||.|||||.||.|||||..|..||||.||||||||||  |||.
BPUM_2439___m    687 TGCGTATCGAAATATCGCTCGCCGTGTACTAGGCGAATCTGTTCCACTTC    736

BSNT_04063___    738 A--CAGGTGCTTGAAGAGCAAAACAAAGGAATGATGGCTAAGATTAAGTC    785
                     |  ||    .|||||||..||||||||||||||.|.||||||.|.||..|
BPUM_2439___m    737 AATCA----TTTGAAGATGAAAACAAAGGAATGTTTGCTAAGCTGAAAGC    782

BSNT_04063___    786 ATTTTTCGGAGTAAGATCTTAA    807
                     ||||||.||.||.|||.|||||
BPUM_2439___m    783 ATTTTTTGGTGTGAGAGCTTAA    804


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04063 and BPUM_2439

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
