Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04062 and BPUM_2438

See Amino acid alignment / Visit BSNT_04062 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:34
# Commandline: needle
#    -asequence dna-align/BSNT_04062___spoIVFA.1.24716.seq
#    -bsequence dna-align/BPUM_2438___spoIVFA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04062___spoIVFA-BPUM_2438___spoIVFA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04062___spoIVFA-BPUM_2438___spoIVFA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04062___spoIVFA
# 2: BPUM_2438___spoIVFA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 878
# Identity:     524/878 (59.7%)
# Similarity:   524/878 (59.7%)
# Gaps:         169/878 (19.2%)
# Score: 1385.5
# 
#
#=======================================

BSNT_04062___      1 ATGAGTCACAGAGCAGATGAAATCAGAAAACGATTAGAGAAAAGAAGAAA     50
                                     ||||||..||...||||.||..||    ||||||
BPUM_2438___s      1 ----------------ATGAAAAGAGTGGACGAGTACCGA----AAGAAA     30

BSNT_04062___     51 -----GCAGCTTTCCGGCTCAAAAC----------GTTTCTCTACTC---     82
                          ||||     ||.|.||||||          |||.|||.| ||   
BPUM_2438___s     31 ATCGCGCAG-----CGCCGCAAAACGAAGCATTCAGTTGCTCCA-TCTAA     74

BSNT_04062___     83 --AGAC-AGTTTC---TGAAAAGCAGAAACCCCCGTCC-TGGGTGATGGT    125
                       |||| |..|||   ..|||||..||.|..||  ||| |||||.|||.|
BPUM_2438___s     75 GAAGACGACCTTCAAGAAAAAAGAGGATATTCC--TCCATGGGTCATGTT    122

BSNT_04062___    126 AACGGATCAGGAAAAACATGGAACAATTCCGGTT--------TATGAAGA    167
                     |||.||..|.|||||.|        ||||.||.|        |.||||| 
BPUM_2438___s    123 AACAGAGGAAGAAAAGC--------ATTCAGGGTCGTCTTCCTTTGAAG-    163

BSNT_04062___    168 TAACATGCCAACAT----TCAACGGAA--------AACACCCATTGGTGA    205
                             |..|.|    |||||.|||        |.||.|||.|..|.|
BPUM_2438___s    164 --------CGTCGTCTCATCAACCGAAGAAATATCAGCATCCACTATTTA    205

BSNT_04062___    206 AAACAGATTCAATTATCCTGAAATGTCTTCTGTCGGCCTGCCTTGTTCTC    255
                     |..|..||.|..||.|.|||||||||.|..|.||.||.|.||||||..|.
BPUM_2438___s    206 ACCCCAATGCCTTTGTACTGAAATGTTTATTATCTGCATCCCTTGTGTTG    255

BSNT_04062___    256 GTTTCAGCTATAGCCTATAAA--ACAAACATTGGACCCGT--CAGTCAGA    301
                     .||.||||||||.|.|.||||  .||..||   |..||||  ||| |||.
BPUM_2438___s    256 ATTGCAGCTATATCGTTTAAAGGTCAGGCA---GGGCCGTTCCAG-CAGC    301

BSNT_04062___    302 TTAAACCCGCCG-----TA-GCCAAAACCTTTGAAACTGAATTTCAATTT    345
                     |.||    ||||     || ||  |.||||||||....||.|||||||||
BPUM_2438___s    302 TGAA----GCCGATCATTACGC--AGACCTTTGAGCAGGATTTTCAATTT    345

BSNT_04062___    346 GCCTCAGCAAGCCATTGGTTCGAAACCAAATTCGGAAATCCGCTTG-CTT    394
                     ||..|.||.|..|..|||||.||.|..|.|.|.|||||.||.|||| |||
BPUM_2438___s    346 GCTGCTGCTAATCGCTGGTTTGAGAAAACAGTTGGAAACCCCCTTGCCTT    395

BSNT_04062___    395 TCCTGGCTCCTGAAC--ACAAAAATAAGGAACAGCAAATTGAAGT--AGG    440
                     |         |.|||  |||||   ||||||.|.||||..||.||  |.|
BPUM_2438___s    396 T---------TTAACGGACAAA---AAGGAAGACCAAAAAGATGTACAAG    433

BSNT_04062___    441 CAAA----GATCTGATCGCGCCTGCATCCGGGAAAGTACAGCAGGAT--T    484
                     |.||    ||.|||..||..|||||.||.||.|||||.|||  |.||  |
BPUM_2438___s    434 CGAACCATGAACTGGCCGTACCTGCTTCTGGAAAAGTTCAG--GAATCCT    481

BSNT_04062___    485 TTCAGGACAATGGGGAAGGAATTAAAGTCGAAACA--AGCAGTGATAAGA    532
                     ||..|.|.|||||.|.|||..|.||||||||||||  .||  |||...||
BPUM_2438___s    482 TTACGCAAAATGGAGCAGGTGTCAAAGTCGAAACATCGGC--TGAAGCGA    529

BSNT_04062___    533 TTGATAGCGTAAAAGAAGGCTATGTGGTTGAAGTCAGCAAAG-ACAGCCA    581
                     |.||.||..|.||.|||||||||||.||.|||||.| .|||| |.||..|
BPUM_2438___s    530 TAGACAGTATGAAGGAAGGCTATGTAGTGGAAGTGA-AAAAGAAAAGTGA    578

BSNT_04062___    582 AACGGGACTGACGGTTAAGGTGCAGCATGCTGACAACACCTATA----GT    627
                     .||.||.|||||.||....|||||||||||.||.||||.|||||    ||
BPUM_2438___s    579 CACAGGGCTGACAGTGGTCGTGCAGCATGCGGATAACAGCTATAGCTGGT    628

BSNT_04062___    628 A---TCTATGGCGAGCTCAAAGATGTGGATGTTGCTTTATATGATTTTGT    674
                     |   ||.||       |.||.||.|..|||||.||.|||||.||||||||
BPUM_2438___s    629 ACGGTCAAT-------TAAAGGAAGCTGATGTGGCCTTATACGATTTTGT    671

BSNT_04062___    675 GGATAAAGGCAAAAAGCTCGGTTCGAT-TAAGCTTGATGATCATAATAAA    723
                     .|||||.||..|.||..|.|||..||| |.| ||||||||||| |..|||
BPUM_2438___s    672 TGATAAGGGTGAGAAAATTGGTCAGATCTCA-CTTGATGATCA-AGGAAA    719

BSNT_04062___    724 GGGGTC-TATTATTTTGCCATGAAAGACGGC-----GATAAATTTATTGA    767
                     |||..| |||||.|||||.||.||     ||     ||..|.|||||.||
BPUM_2438___s    720 GGGCACATATTACTTTGCTATTAA-----GCAAAATGAACAGTTTATCGA    764

BSNT_04062___    768 TCCGATTCAGGTGATTACATTTGAATAA    795
                     |||.|||||||||||.||.||||||||.
BPUM_2438___s    765 TCCTATTCAGGTGATGACCTTTGAATAG    792


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04062 and BPUM_2438

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
