Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04052 and BPUM_2430

See Amino acid alignment / Visit BSNT_04052 in genome browser / Return to Orthologue table 
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:33
# Commandline: needle
#    -asequence dna-align/BSNT_04052___pheA.1.24716.seq
#    -bsequence dna-align/BPUM_2430___pheA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04052___pheA-BPUM_2430___pheA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04052___pheA-BPUM_2430___pheA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04052___pheA
# 2: BPUM_2430___pheA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 949
# Identity:     601/949 (63.3%)
# Similarity:   601/949 (63.3%)
# Gaps:         161/949 (17.0%)
# Score: 1808.0
# 
#
#=======================================

BSNT_04052___      1 ATGAA---------AGTCGGTTATTTAGGTCCAGCAGCTACATTTACACA     41
                     |||||         .||.||||||||.||.||||..||.||||||||.||
BPUM_2430___p      1 ATGAAGCAATTAACTGTAGGTTATTTTGGACCAGAGGCAACATTTACTCA     50

BSNT_04052___     42 TCTAGCAGTCAGTTCTTGTTTTCAAAACGGCGCCGA-ACA-TGTTGCTTA     89
                     |.|.||.||..|.|||||.||||.|      ||.|| .|| ||..||.|.
BPUM_2430___p     51 TTTGGCCGTATGCTCTTGCTTTCCA------GCAGATGCAGTGCAGCGTG     94

BSNT_04052___     90 CC---GC-ACCATTCCGGAGTGTATAGATGCAGCCGTTG----CAGGCGA    131
                     ||   || ||.||||||.|.|||||.|||||.|    ||    .||||||
BPUM_2430___p     95 CCTATGCAACGATTCCGCAATGTATGGATGCTG----TGTCAAAAGGCGA    140

BSNT_04052___    132 AGTTGATTTTGCTTTTGTTCCTTTGGAAAATGCATTAGAAGGATCTGTTA    181
                     |||.|||||.||..|.|||||..|.|||||||||.|.|||||||||||.|
BPUM_2430___p    141 AGTCGATTTGGCGGTCGTTCCACTTGAAAATGCACTCGAAGGATCTGTGA    190

BSNT_04052___    182 ATCTAACAATAGACTATTTAATACATGAA-CAGCCCT-TGCCAATCGTGG    229
                     |..||||.||.||.||||||||.|||||| .|||.|| |  |.||.||.|
BPUM_2430___p    191 ACTTAACGATTGATTATTTAATTCATGAAGAAGCGCTAT--CTATTGTTG    238

BSNT_04052___    230 GTGAAATGACGTTGCCGATTCATCAGCACTTGCTCGTCCATCCCTCTAGA    279
                     |.||||||||....|||||||.||||||.|||||.||.||.||.||.|.|
BPUM_2430___p    239 GAGAAATGACAGCACCGATTCGTCAGCATTTGCTTGTTCACCCTTCAAAA    288

BSNT_04052___    280 G-AGAATGCATGGAAAGAGCTCGACA--AAATTT-----ACTCACATTCA    321
                     | .|||.||..|||        ||||  |.||.|     |.||||||.|.
BPUM_2430___p    289 GCGGAAAGCTGGGA--------GACATTAGATGTGATCCAATCACATCCG    330

BSNT_04052___    322 CACGCGATTGCGCAATGCCATAAATTTCTTCATCGA-----CATTTTCC-    365
                     |||||||||||.||.||.|||.|||||||     ||     ||.|..|| 
BPUM_2430___p    331 CACGCGATTGCCCAGTGTCATCAATTTCT-----GAAAAAGCAGTACCCG    375

BSNT_04052___    366 ----TTCCG----TTCCATATGAATACGCCAA----TTCTACCGGGGCGG    403
                         |||||    .||||..|||||    |||    ||.|         |
BPUM_2430___p    376 GATATTCCGCACCGTCCAGTTGAAT----CAACTGGTTAT---------G    412

BSNT_04052___    404 CAGCAAAGTTTGTCAGTGACCATCCCGA----GCTGAATATC-GGGGTCA    448
                     ||||.||.|.|.|.|||||.|||||.||    ||||     | ||||..|
BPUM_2430___p    413 CAGCGAAATATATTAGTGAGCATCCAGAGGAGGCTG-----CTGGGGCGA    457

BSNT_04052___    449 TTGCCAATGATATGGCAGCTTCTACATACGAA----TTAAAAATCGTGAA    494
                     ||||||||||.||.||.||    |||.|||.|    ||||..||.|..||
BPUM_2430___p    458 TTGCCAATGAAATTGCCGC----ACAAACGTATGGTTTAACGATTGCAAA    503

BSNT_04052___    495 ACGGGATATACAGGATTATAGGGACAATCATACAAGATTTGTTAT-----    539
                     |...||.||.||.||||||..|.|||||||||||.|.||||||||     
BPUM_2430___p    504 AAAAGACATCCATGATTATCCGCACAATCATACACGCTTTGTTATTTTAC    553

BSNT_04052___    540 --------CCTGTCTCCTGATGAAAACATATCTTTTGAAGTGAATTCAAA    581
                             |||           |||.|  |||.||...|.|||||.|   
BPUM_2430___p    554 ATAAAGACCCT-----------AAAGC--ATCATTCCCAATGAATGC---    587

BSNT_04052___    582 ATTGAGTTCT-----AGGCCCAAAACGACCTTAATG--GTCATGCTGCCG    624
                       ||.|||||     |.|||.||||||||  ||.||  ||||..|||||.
BPUM_2430___p    588 --TGGGTTCTCATCGAAGCCAAAAACGAC--TATTGTCGTCAGTCTGCCA    633

BSNT_04052___    625 CAGGATGATCAGTCCGGGGCGCTGCATAGAGTGCTGTCTGCATTTTCTTG    674
                     .|||||||.||.||.||.||..|.||..|.|||.|.|||||.||||||||
BPUM_2430___p    634 AAGGATGACCAATCAGGTGCATTACACCGTGTGTTATCTGCTTTTTCTTG    683

BSNT_04052___    675 GAGAAATTTAAACTTGTCAAAAATTGAGTCACGTCCGACTAAAACCGGAT    724
                     |.|||||.|.|||||||||||||||||.||.||.||.||.|||||.||..
BPUM_2430___p    684 GCGAAATCTCAACTTGTCAAAAATTGAATCTCGCCCAACAAAAACGGGTC    733

BSNT_04052___    725 TAGGCCATTATTTCTTTATTATTGATATTGAGAAAGCGTTTGATGATGT-    773
                     |.||.||.|||||.||||||||.|||||.||.||||...|.|||||||| 
BPUM_2430___p    734 TTGGACACTATTTATTTATTATAGATATAGAAAAAGAAATGGATGATGTC    783

BSNT_04052___    774 ATTGATTCCAGGGGCCATGCAGGAGCTTGAAGCACTCGGCTGCAAAGTGA    823
                     .||| |.||.||.|||||.|||||..|.||||||.|.|||||..||||.|
BPUM_2430___p    784 CTTG-TCCCTGGCGCCATTCAGGAATTAGAAGCAATTGGCTGTGAAGTCA    832

BSNT_04052___    824 GGCTTCTGGGTGCA--TACCA--------GTCTTACCAATTATAA----    858
                     ...|.||.|  |||  |||||        ..||.||.|||.|.||    
BPUM_2430___p    833 AATTGCTCG--GCAGCTACCAAACATATGAACTAACGAATGAGAAATAG    879


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