Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04041 and BPUM_2423
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_04041.1.24716.seq
# -bsequence dna-align/BPUM_2423___coxA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04041-BPUM_2423___coxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04041-BPUM_2423___coxA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04041
# 2: BPUM_2423___coxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 754
# Identity: 391/754 (51.9%)
# Similarity: 391/754 (51.9%)
# Gaps: 233/754 (30.9%)
# Score: 902.0
#
#
#=======================================
BSNT_04041 0 -------------------------------------------------- 0
BPUM_2423___c 1 ATGCTAAAACAGAGCCTGTTTCGCGCTCATGAGATTGAATTTGTACAGGG 50
BSNT_04041 1 ----------TTGGGTAAAAAAATG-------ACGATCGC--TAGCCTGA 31
|||.| |.||||||| |||||||| ||| ||.
BPUM_2423___c 51 GGTTTTTCGTTTGAG-ACAAAAATGGCAAAAAACGATCGCATTAG--TGC 97
BSNT_04041 32 TTCTAATGACAGCC----GGCTTAACAGCTTGCGGAGCAAACGATAATGC 77
|||| .|| ||.|||||.||.||.||..||||.||.|||||
BPUM_2423___c 98 TTCT-------TCCTATTGGGTTAACGGCATGTGGTACAAATGACAATGC 140
BSNT_04041 78 TATGAAT-GATACGCG---CAATAACGACAATACCCGT---CCAATCGGA 120
|.|..| |||||.|| |||| |||| |..|| |||.|.|||
BPUM_2423___c 141 -AGGTGTCGATACACGTCACAAT-----CAAT-CAGGTCAGCCAGTTGGA 183
BSNT_04041 121 TATTATTCAAATGAAAATGACGCCGATAGACAGGGAGACGGAATCGACCA 170
|||.||||.||| |||...||.||| |||| |.|...|| ||.||
BPUM_2423___c 184 TATCATTCGAAT---AATCGTGCGGAT-GACA---ATAACCAA--GATCA 224
BSNT_04041 171 CGATGGTCCTGTTTCTGAATTAATGGAGGATCAGAACG-ACGGTAACCGA 219
|.|.||.||.|||||.|||.|.||||||| |||.| ||||| .|.
BPUM_2423___c 225 CCAAGGACCAGTTTCCGAACTCATGGAGG----GAATGAACGGT---GGG 267
BSNT_04041 220 AACACCACGAATGTAAATAACCGTGACCGTGTTACTGCTGACGATCGTGT 269
||.||.||||||||..||.|.||...||||..|...|||||||||||...
BPUM_2423___c 268 AATACAACGAATGTTGATTATCGCACCCGTCCTCAAGCTGACGATCGAAC 317
BSNT_04041 270 TCCTTTGGCAACT---GACGGAACATATAACAACACGAATAACCGAAACA 316
.|||.|.|||..| ||.|||..|||||.| ||.| ||.|.|
BPUM_2423___c 318 GCCTCTCGCAGGTGGAGATGGACGATATAGC--CATG-------GAGATA 358
BSNT_04041 317 TGA--------ATCGGAATGCAGCGAACAACGGGTATGACAACCAAGAAA 358
||| |.|..|||| .||..|...||.||.||.||.|||||||
BPUM_2423___c 359 TGAACTACCATAACCAAATG--TCGTTCTCTGGCTACGATAAACAAGAAA 406
BSNT_04041 359 ACAGAAGACTGGCTGC----------AAAAATTGCCAACCGTGTGAAACA 398
|| .||| ||||||||||||.||.||.||..|
BPUM_2423___c 407 AC----------GTGCAACGTTCAAGAAAAATTGCCAATCGCGTCAATAA 446
BSNT_04041 399 AGTGAAAAACGT--CAATGACACACAAGTTATGGTATCGGATG--ACCGA 444
|.||||..|.|| || |||.|.|||||.||||||.|.|||| |..|.
BPUM_2423___c 447 AATGAATCATGTTGCA--GACTCGCAAGTAATGGTAACAGATGAAAATGT 494
BSNT_04041 445 GTAGTTATCGCAGTCAAAAGCCACAGA-GAGTTCACAAAGTCTGA---CA 490
||| |||.||..|.||| .|||| |.| .|||||| ||
BPUM_2423___c 495 GTA--TATTGCCATTAAA----TCAGATGGG-------CGTCTGACATCA 531
BSNT_04041 491 GAGATAAT-------GTCGTAAAAGCAGCGCGCAAC----TATGCAAATG 529
|||..||| ||.|.|.|||||||| || |||||..|||
BPUM_2423___c 532 GAGGGAATATCACAAGTGGAAGAAGCAGCG----ACTCGTTATGCGGATG 577
BSNT_04041 530 GCCGTGACGTCCAGGT-ATCAACAGATAAAGG-GCTGTTC---------- 567
|..|.|..|||||.|| ||.|| |||..|.|| ||| |||
BPUM_2423___c 578 GAAGAGCTGTCCAAGTCATTAA-AGACGAGGGTGCT-TTCACACGCTTTA 625
BSNT_04041 568 -----------AGAA---AACTTCATAAAATG---AACA------AC-CG 593
|||| ||.||.| ||.|.| |||| || ||
BPUM_2423___c 626 GAGATATGAGAAGAACACAATTTGA-AACAGGTCAAACAGGCATGACTCG 674
BSNT_04041 594 CTAG 597
.|||
BPUM_2423___c 675 ATAG 678
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