Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04023 and BPUM_2416
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_04023___ruvA.1.24716.seq
# -bsequence dna-align/BPUM_2416___ruvA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04023___ruvA-BPUM_2416___ruvA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04023___ruvA-BPUM_2416___ruvA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04023___ruvA
# 2: BPUM_2416___ruvA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 629
# Identity: 453/629 (72.0%)
# Similarity: 453/629 (72.0%)
# Gaps: 46/629 ( 7.3%)
# Score: 1608.0
#
#
#=======================================
BSNT_04023___ 1 GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATAT 50
|||||.||.|||||.||||||||.|||||||||||.|..||.||||||.|
BPUM_2416___r 1 GTGATAGAGTTTGTAAAAGGGACCATTGATTATGTGTGCCCGCAATATGT 50
BSNT_04023___ 51 TGTCATAGAGAACGGCGGCATCGGCTATCAGATTTTCACGCCGAATCCGT 100
|||||||||.||||||||..|.||.|||||..|.|..|..||.||.||||
BPUM_2416___r 51 TGTCATAGAAAACGGCGGAGTGGGATATCAAGTCTATAGCCCAAACCCGT 100
BSNT_04023___ 101 TTATATATAAGGAGAGAAGC------CAGGAAACGATTTTTACATACCAT 144
||||.|||.| ||.| ||.||||||||||.|||.||.|||
BPUM_2416___r 101 TTATCTATCA------AATCAATAAACAAGAAACGATTTATACGTATCAT 144
BSNT_04023___ 145 CATATCAGAGAGGATGCTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGA 194
.|.||.|..||.||.|||||.|||.|.||.||.|||..||||.||||.||
BPUM_2416___r 145 TACATAAAGGAAGACGCTTTCTCGTTATATGGATTTCAAACACGAGAAGA 194
BSNT_04023___ 195 GAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCGAAAG 244
.||.|||||.||.|||||.||||||||.||.||.||.|||||.|||||.|
BPUM_2416___r 195 AAAAGCGCTGTTCACAAAACTGTTAAATGTCACAGGGATTGGGCCGAAGG 244
BSNT_04023___ 245 GAGCACTTGCCA-TCTTGGGC-TCGGGTGATCCCGGAGCGGTCATCCAAG 292
|.||.||.||.| |||| || ||.||||||||.||.||.||.|||..||
BPUM_2416___r 245 GGGCTCTAGCGATTCTT--GCTTCCGGTGATCCTGGCGCTGTGATCTCAG 292
BSNT_04023___ 293 CAATTGAAAATGAAGATGAAGCTTTTTTGGTCAAGTTTCCTGGAGTAGGA 342
|.||.|||..||||||||||||.||..||.|.|||||.|||||.||.||.
BPUM_2416___r 293 CGATAGAACGTGAAGATGAAGCGTTCCTGATTAAGTTCCCTGGCGTTGGC 342
BSNT_04023___ 343 AAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGA 392
||.||.||.||.|||||.||.|||||.|||.|||||||||||||.||.||
BPUM_2416___r 343 AAAAAGACAGCTCGCCAAATCATTCTCGATCTAAAAGGAAAGCTAGCGGA 392
BSNT_04023___ 393 TGTTGTGCCTGAAATGATTGAAAATCTGTTTAATCATGAAGA-------A 435
||||||.|||||||||||||..|||||.||||||||.||.|| .
BPUM_2416___r 393 TGTTGTTCCTGAAATGATTGGCAATCTATTTAATCACGAGGACCATATTC 442
BSNT_04023___ 436 AGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTTGAAGC 485
||| |.||||.||| |.|||||||..|.||.|||||.||||||||
BPUM_2416___r 443 AGG-TCGAAACGCA------GCAAACGGCATTAGACGAAGCGCTTGAAGC 485
BSNT_04023___ 486 CCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCC-- 533
|.|.||.|||||.|||||.|.|||....|||||.||||||||...|||
BPUM_2416___r 486 CTTAAGTGTTCTTGGATACGGTGATCGCGAAATTAAAAAGGTATATCCAT 535
BSNT_04023___ 534 --TCACCTTAAAGAAGA----AATTGGGCTGACAACAGACCAATATGTGA 577
| |.|||||||| ||| ||.|||||.||.||||||||||
BPUM_2416___r 536 TGT----TAAAAGAAGAAAAGAAT----CTCACAACCGATCAATATGTGA 577
BSNT_04023___ 578 AAAAAGCATTACAAAAACTATTAAAGTAA 606
|||||||.|||||||||.|.||.||.||.
BPUM_2416___r 578 AAAAAGCTTTACAAAAAATGTTGAAATAG 606
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