Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04022 and BPUM_2415
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_04022___ruvB.1.24716.seq
# -bsequence dna-align/BPUM_2415___ruvB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04022___ruvB-BPUM_2415___ruvB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04022___ruvB-BPUM_2415___ruvB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04022___ruvB
# 2: BPUM_2415___ruvB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1024
# Identity: 741/1024 (72.4%)
# Similarity: 741/1024 (72.4%)
# Gaps: 38/1024 ( 3.7%)
# Score: 2563.5
#
#
#=======================================
BSNT_04022___ 1 ATGGATGAACGGCTCGTCTCAAGTGAAGCAGACAACCATGAATCAGTGAT 50
||||||||||||||||||||||.|||||||||||||||||||||||..||
BPUM_2415___r 1 ATGGATGAACGGCTCGTCTCAACTGAAGCAGACAACCATGAATCAGCCAT 50
BSNT_04022___ 51 AGAGCAAAGCCTGAGGCCGCA-AAATCTGGCACAGTATATCGGGCAGCAT 99
.||||||||.|||.||||.|| |.|..|.|| ||.||||||||.|||||.
BPUM_2415___r 51 TGAGCAAAGTCTGCGGCCTCAGACACTTAGC-CAATATATCGGTCAGCAA 99
BSNT_04022___ 100 AAGGTAAAAGAAAATTTGCGCGTGTTTATAGATGCGGCGAAAATGAGACA 149
||.||.||.||.||..|..|.||||||||.||.||.||....|||||.||
BPUM_2415___r 100 AAAGTTAAGGATAACCTCAGTGTGTTTATTGAAGCTGCCCGTATGAGGCA 149
BSNT_04022___ 150 GGAGACGCTGGATCATGTTCTTCTGTACGGGCCGCCCGGACTCGGAAAAA 199
|||.|||||.|||||.||.||..|.|||||.||||||||||||||.||||
BPUM_2415___r 150 GGAAACGCTCGATCACGTCCTCTTATACGGACCGCCCGGACTCGGGAAAA 199
BSNT_04022___ 200 CAACGCTTGCTTCGATTGTTGCTAATGAAATGGGAGTGGAAT-------T 242
|.||||||||.||.|||.||||.|||||||| |||| |
BPUM_2415___r 200 CGACGCTTGCGTCAATTATTGCCAATGAAAT-------GAATGTTCAGCT 242
BSNT_04022___ 243 GCGGACGACATCAGGGCCTGCGATTGAAAGGCCTGGTGATTTGGCTGCTA 292
|||.||.|||||.||.||.|||||||||.|.||||||||||||||.||.|
BPUM_2415___r 243 GCGTACAACATCTGGACCAGCGATTGAACGTCCTGGTGATTTGGCGGCGA 292
BSNT_04022___ 293 TATTAACGGCGCTGGAACCGGGAGATGTATTATTTATTGATGAAATACAT 342
|.||||||.|.||.||.||.||.|||||.||.|||||.||||||||.|||
BPUM_2415___r 293 TTTTAACGTCTCTTGAGCCAGGTGATGTGTTGTTTATAGATGAAATTCAT 342
BSNT_04022___ 343 AGGCTGCACAGATCGATCGAAGAGGTGCTTTATCCTGCAATGGAAGACTT 392
.|..||||..|.||.||.||.||.||.||||||||.||||||||.||.||
BPUM_2415___r 343 CGCTTGCAGCGTTCAATTGAGGAAGTACTTTATCCAGCAATGGAGGATTT 392
BSNT_04022___ 393 TTGCCTGGACATTGTGATTGGCAAAGGCCCAT-CTGCCCGCTCGGTTCGC 441
|||..|.||.||.||.||||||||||| ..|| |.||.|||||.||.||.
BPUM_2415___r 393 TTGTTTAGATATCGTCATTGGCAAAGG-AGATACAGCGCGCTCTGTACGG 441
BSNT_04022___ 442 CTCGACCTTCCGCCTTTTACGCTGGTGGGAGCCACGACGAGGGTGGGGCT 491
||.||..|.|||||.|||||.||.||.||.||.||.||..|.||.|||||
BPUM_2415___r 442 CTTGATTTACCGCCATTTACACTTGTAGGTGCTACAACCCGTGTTGGGCT 491
BSNT_04022___ 492 TTTGACGGCTCCTTTAAGAGACAGATTCGGCGTA-ATGTCTCGCCTTGAG 540
|||.||.||.||..|..|.|||||.||.||.||| ||| |..|..|.||.
BPUM_2415___r 492 TTTAACAGCGCCGCTTCGTGACAGGTTTGGGGTACATG-CAAGATTGGAA 540
BSNT_04022___ 541 TACTATACACAAGAAGAACTGGCGGATATTGTCACAAGAACCGCTGATGT 590
||||||...|||..|||..||||..|.|||||..|||||||.||.||..|
BPUM_2415___r 541 TACTATGAGCAAAGAGATTTGGCTCACATTGTTTCAAGAACAGCAGAGCT 590
BSNT_04022___ 591 ATTCGAGGTTGAGATTGATAAACCGTCGGCTC-----TTGAAATTGCAAG 635
.||||||.|||..|||||| |.|| |||| ..||.||.|||||
BPUM_2415___r 591 GTTCGAGATTGGAATTGAT----CTTC-GCTCAGCCGAAGAGATCGCAAG 635
BSNT_04022___ 636 AAGATCGAGAGGGACGCCCCGCGTGGCGAACCGCCTGCTGAGAAGGGTGC 685
|.|.||..|.||.|||||..|.||.||.||.||.||.||.|||||.||..
BPUM_2415___r 636 ACGTTCCCGCGGTACGCCGAGGGTTGCCAATCGTCTACTCAGAAGAGTAA 685
BSNT_04022___ 686 GCGATTTCGCCCAAGTGCTGGGTGACAGCA--GGATTACGGAAGACATTT 733
|.|||||.|||||.|||||.| ||.|.|| .||||||.||.||||||.
BPUM_2415___r 686 GAGATTTTGCCCAGGTGCTTG--GAAATCATTCGATTACCGAGGACATTG 733
BSNT_04022___ 734 CTCAGAATGCGCTGGAGCGGCTTCAGGTTGACCGTCTCGGTTTGGATCAT 783
|..|..||||.||.|||||.|||||.||.|||...||.|||.|.||||||
BPUM_2415___r 734 CGGAAGATGCCCTTGAGCGCCTTCAAGTCGACAAGCTTGGTCTTGATCAT 783
BSNT_04022___ 784 ATTGATCATAAGCTGCTGATGGGCATGATCGAAAAATTCAACGGCGGCCC 833
||.||||||||||||||..|..|.|||||.||||||||.|..|||||.||
BPUM_2415___r 784 ATCGATCATAAGCTGCTTTTAAGTATGATTGAAAAATTTAGAGGCGGTCC 833
BSNT_04022___ 834 AGTAGGCCTTGATACGATTTCAGCTACCATCGGCGAGGAATCGCATACGA 883
.||.||.|||||.||.||.|||||.||.||.||.||.|||||.|||||||
BPUM_2415___r 834 TGTTGGGCTTGACACAATCTCAGCGACAATTGGAGAAGAATCACATACGA 883
BSNT_04022___ 884 TTGAAGACGTATATGAACCATATCTGCTGCAAATTGGATTTATACAAAGA 933
|||||||.||.||.|||||.|||.|.|||||||||||.||..||||||||
BPUM_2415___r 884 TTGAAGATGTGTACGAACCGTATTTACTGCAAATTGGTTTCCTACAAAGA 933
BSNT_04022___ 934 ACGCCGCGTGGAAGGATCGTGACACCGGCCGTTTATCATCATTTCCAAAT 983
||.||..|.|||.|..||||.|||...|..|..|||.|.||.||.|||||
BPUM_2415___r 934 ACACCAAGAGGACGAGTCGTCACAAGAGAAGCGTATGAACACTTTCAAAT 983
BSNT_04022___ 984 GGAGGCTCCCCGAT--ATGACTGA 1005
|||||.| ||||| .|||||||
BPUM_2415___r 984 GGAGGTT--CCGATTCGTGACTGA 1005
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