Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04008 and BPUM_2404
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:31
# Commandline: needle
# -asequence dna-align/BSNT_04008___yrvD.1.24716.seq
# -bsequence dna-align/BPUM_2404___yrvD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04008___yrvD-BPUM_2404___yrvD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04008___yrvD-BPUM_2404___yrvD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04008___yrvD
# 2: BPUM_2404___yrvD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 376
# Identity: 219/376 (58.2%)
# Similarity: 219/376 (58.2%)
# Gaps: 74/376 (19.7%)
# Score: 594.5
#
#
#=======================================
BSNT_04008___ 1 ATGAATA---AACAATGGACCATTATTTTCGCACTTATTTTCACCTTAAT 47
|||||.| |||||||||||||.||..|||||.||||||||...|||||
BPUM_2404___y 1 ATGAACAAACAACAATGGACCATCATACTCGCATTTATTTTCGTATTAAT 50
BSNT_04008___ 48 TGTCGC--TATTTTCGCAGTCATTAATGTTCGATCCGTAGAAGTTGATTA 95
||||.| ||||| ||.|||||.|||||.||..|.||..|||||||.||
BPUM_2404___y 51 TGTCTCAGTATTT--GCCGTCATCAATGTGCGGCCAGTGCAAGTTGACTA 98
BSNT_04008___ 96 CCTGTTTGGAAGATCAGAATGGCCGCTCATTCTTGTTATTTTGGGCTCAG 145
..|.||||||....|.|||||||||||.||.|||||.|||.|.||.||.|
BPUM_2404___y 99 TTTATTTGGATCGGCTGAATGGCCGCTAATCCTTGTCATTATTGGTTCTG 148
BSNT_04008___ 146 TTTTAATGGGAGCGCTGATCGTATTTTCTGTCGGCATTTTTCAGGTAATG 195
|..|.|||||.|..||.||.||...||.||..||.|||||.||..|..||
BPUM_2404___y 149 TGCTCATGGGCGGACTCATTGTGGCTTTTGCAGGGATTTTCCAAATTGTG 198
BSNT_04008___ 196 AAATTGAAGCGGGAAATAAAAACCTT----GCGGA--------------- 226
|||.|.||.||.|||.||||..|.|| ||.||
BPUM_2404___y 199 AAACTAAAACGTGAATTAAAGGCTTTAAAAGCTGAGCGTGCAGCCGCACC 248
BSNT_04008___ 227 ----------------AAGAAAATAGA---ACAGCAATACATAAACAAGA 257
||.|||| ||| ||| ||.||.|..|.||||
BPUM_2404___y 249 TGCACCTGTTGTTTCGAATAAAA-AGATCGACA--AAGACGTTCAAAAGA 295
BSNT_04008___ 258 ----GGAT---ACTCATCTTGCTGATCAGACTGACACACAGGATGCATCA 300
|.|| ||.|.| |.|..||| ||||...||||||
BPUM_2404___y 296 AACCGAATGTGACGCCT-----TTAAAAGA-------ACAGCCAGCATCA 333
BSNT_04008___ 301 GCCATGATTG--AGAAAAAAGACTAG 324
..||||.| ||.|||||.|.
BPUM_2404___y 334 --TTTGATCGGAAGGAAAAATAA--- 354
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