Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03993 and BPUM_2392
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:29
# Commandline: needle
# -asequence dna-align/BSNT_03993___yrvO.1.24716.seq
# -bsequence dna-align/BPUM_2392___yrvO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03993___yrvO-BPUM_2392___yrvO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03993___yrvO-BPUM_2392___yrvO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03993___yrvO
# 2: BPUM_2392___yrvO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1224
# Identity: 792/1224 (64.7%)
# Similarity: 792/1224 (64.7%)
# Gaps: 165/1224 (13.5%)
# Score: 2429.5
#
#
#=======================================
BSNT_03993___ 1 ATGGAACGGATTTATTTAGATCATGCCGCAACGTCTCCGATGGATGAGCG 50
||||||||.||.||||||||||||||.|||||..|.|||||||||.||||
BPUM_2392___y 1 ATGGAACGAATCTATTTAGATCATGCGGCAACAACGCCGATGGATCAGCG 50
BSNT_03993___ 51 CGTGCTGGAAAAAATGATACCGCACTTCTCCGGCAGTTTCGGTAATCCCT 100
..|..||||.||.|||||.||..||||..|.|..|..||.||.|||||.|
BPUM_2392___y 51 TATCGTGGACAAGATGATCCCTTACTTTACAGAGATATTTGGCAATCCTT 100
BSNT_03993___ 101 CCAGTATTCATTCATTTGGCAGAGAATCTCGAAAATGGGTGGATGAAGCA 150
|.||.||||||||||.|||..|.||..|..||||.|||.|.|||||||||
BPUM_2392___y 101 CTAGCATTCATTCATATGGGCGCGAGGCAAGAAAGTGGCTTGATGAAGCA 150
BSNT_03993___ 151 AGAGCGCAGATCGCAGCAGAAAT---CGG--AGCGGCAGAGCAGGAGATC 195
||||....|||.||||.||||.| |.| |.| || |||||..||
BPUM_2392___y 151 AGAGAAGTGATTGCAGGAGAATTACACTGTAAAC--CA---CAGGAAGTC 195
BSNT_03993___ 196 ATTTTTACAAGCGGGGGAACGGAAGCTGATAACTTGGCGAT--------- 236
||..|.|||||.||.|||||.||.||.||.|||.|||||||
BPUM_2392___y 196 ATCCTCACAAGTGGAGGAACAGAGGCGGACAACCTGGCGATTACAGGTGT 245
BSNT_03993___ 237 ---CATGGGAACCGCACTTGCAAGAAAAGATCTTGGCAGACATATCATCA 283
.||||.|| .||| |||.||| ||.|.||||||.||||
BPUM_2392___y 246 GGCTATGGCAA-GGCA---GCATGAA--------GGAAAACATATTATCA 283
BSNT_03993___ 284 CAACAAAAATTGAGCATCACGCCGTGCTTCACACATGTGAAAAACTTGAG 333
||.||||||..||||||||.||.|||||.||||||||||||...||.||
BPUM_2392___y 284 CAGCAAAAACAGAGCATCATGCGGTGCTCCACACATGTGAACGCCTAGA- 332
BSNT_03993___ 334 GAAGAC--GGATTTGACATAACGTATCTGGACGTTGACCAAAATGGA-AG 380
|||| | ||||||||..|.||.|||.|.||.||.||..|||..||| .|
BPUM_2392___y 333 GAAG-CTAGGATTTGATGTGACATATTTAGATGTGGATGAAACGGGATTG 381
BSNT_03993___ 381 AGTCAGTGCAAAACAGGTGAAAGAAGCACTGCGTGATGATACAATCCTTG 430
|.||| |..|.||||..|.|||.|.|||||..|.|||||||||||.||||
BPUM_2392___y 382 ATTCA-TCTAGAACAACTAAAACAGGCACTAAGAGATGATACAATTCTTG 430
BSNT_03993___ 431 TGACAGTGATGTATGGAAATAATGAAGTTGGAACAG------TGCAGCCG 474
||||..|.|||||.||.||.||||| ||||| |.||.||.
BPUM_2392___y 431 TGACCATCATGTACGGCAACAATGA------AACAGGTGTAATTCAACCA 474
BSNT_03993___ 475 ATCGAAGAAATCGGTGAGCTGTTAAAGGAACACAAAGCTTATTTTCATAC 524
|||.||||.||.||.||.||..|..|..|.||||..||..||||||||||
BPUM_2392___y 475 ATCAAAGACATTGGCGAACTCATGCACCATCACACTGCGCATTTTCATAC 524
BSNT_03993___ 525 CGATGCTGTTCAGGCATTCGGGTTGCTGCCAATTGATGTGAAAAACAG-- 572
.||.||.||.|||||.||.||.....|||||||.||||| |.|||
BPUM_2392___y 525 AGACGCCGTGCAGGCGTTTGGAACAATGCCAATCGATGT----AGCAGAC 570
BSNT_03993___ 573 --CCATATTGACCTTCTGTCTGTTTCCGGGCACAAGCTCAACGGGCCAAA 620
.||||||||.|||.|.||||.|||.||.||.|||||.||.||.||||.
BPUM_2392___y 571 CTTCATATTGATCTTTTATCTGCTTCTGGTCATAAGCTAAATGGTCCAAT 620
BSNT_03993___ 621 AGGGACAGGCTTTTTATATGCTAGTA----AAGATGTGAAGCTTTCACCG 666
.||.||.|||||||||||| ||| |||..||.||.|||||.|||
BPUM_2392___y 621 GGGAACTGGCTTTTTATAT----GTAAACGAAGGCGTAAAACTTTCTCCG 666
BSNT_03993___ 667 CTTTTATTCGGAGGAGAGCAAGAAAGAAAACGCCGTGCCGGAACCGAAAA 716
|..||.|||||.|||||.||||||||||||||||||||.||.||.|||||
BPUM_2392___y 667 CAATTGTTCGGTGGAGAACAAGAAAGAAAACGCCGTGCTGGTACAGAAAA 716
BSNT_03993___ 717 TGTTCCAGGCATTGTCGGGCTGAAAGAAGCGATCAAGCTG-TCAAGTGAA 765
|||..||||.||.||.||.||...|| |||||| ||||.|
BPUM_2392___y 717 TGTGGCAGGGATCGTGGGACTTGCAG--------AAGCTGTTCAATT--- 755
BSNT_03993___ 766 GAACGGGACGAAAAAAACGAGAA--------GTATCAATCGT----TTAA 803
||||...|.|||.|.|.||||| |.|| .||.|| |.||
BPUM_2392___y 756 -AACGAAGCAAAATAGAAGAGAAAAAGCCATGCAT-TATGGTAAGCTCAA 803
BSNT_03993___ 804 AGCAATCTTTGCCGACACGCTTAGAGATGCAGGTGTGGCATTCGA----- 848
||.||||.| |.||||.|| ||||||
BPUM_2392___y 804 AGAAATCAT----------------GCTGCAAGT-----ATTCGATGAGG 832
BSNT_03993___ 849 ----------------GATCAACGGGGA---CAAAGAG-CATAGTCTGCC 878
.|||||.|||.| .|||||| ||| ||||
BPUM_2392___y 833 AATCACTTATTTTCTCTATCAATGGGCATCCGAAAGAGACAT----TGCC 878
BSNT_03993___ 879 GCATGTTCTGAATCTTTATTTCCCCGGTGTGTCAGTGGAAGCGCTGCTGG 928
.|||.||.|.|||.||.|||||||.|||||.||..|.|||.||.|.||.|
BPUM_2392___y 879 TCATATTTTAAATGTTCATTTCCCGGGTGTTTCCATCGAATCGTTACTTG 928
BSNT_03993___ 929 TCAATCTTGATATGGCGGGTGTCGCTGTCTCCAGCGGTTCAGCGTGTACG 978
|.|||.|.|||||||..||..|.|||||.||.||.||.||.||.||||||
BPUM_2392___y 929 TGAATTTAGATATGGAAGGAATTGCTGTTTCAAGTGGATCTGCATGTACG 978
BSNT_03993___ 979 GCCGGTTCAGTCCTGCCGTCACATGTTCTGACTGCTATGTTCGGCGAAGA 1028
||.||.||.|||||.||.||.||.||..|.|..||.||||..||||||||
BPUM_2392___y 979 GCTGGATCCGTCCTTCCTTCGCACGTGTTAAGCGCCATGTATGGCGAAGA 1028
BSNT_03993___ 1029 GAG-TGACCGGCTGACGTCCTCTATTC-GAATCAGCTTCGGCCTCGGCAA 1076
|| .|||..||||||.||||| |.|| ||||.||||||||.||.||.||
BPUM_2392___y 1029 -AGCAGACAAGCTGACATCCTC-AGTCAGAATAAGCTTCGGTCTTGGGAA 1076
BSNT_03993___ 1077 TACGGCTGAGCAAGTGAAAACTGCTGCCA------AACATGTGGCCGACG 1120
|...|..||.||.||||| ||.|.|| ||.| |.||.|..|
BPUM_2392___y 1077 TGAAGAGGATCACGTGAA----GCAGGCAGCACGTAAGA--TAGCAGCTG 1120
BSNT_03993___ 1121 TTGTCAAACGGCT----GACATAA 1140
||||||||| ||| .|.||||
BPUM_2392___y 1121 TTGTCAAAC-GCTTAGCCAAATAA 1143
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