Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03983 and BPUM_2383

See Amino acid alignment / Visit BSNT_03983 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:28
# Commandline: needle
#    -asequence dna-align/BSNT_03983___glnH.1.24716.seq
#    -bsequence dna-align/BPUM_2383___glnH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03983___glnH-BPUM_2383___glnH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03983___glnH-BPUM_2383___glnH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03983___glnH
# 2: BPUM_2383___glnH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 886
# Identity:     586/886 (66.1%)
# Similarity:   586/886 (66.1%)
# Gaps:         140/886 (15.8%)
# Score: 1840.0
# 
#
#=======================================

BSNT_03983___      1 ATGAAAAAGATTTTTT------CTTTAGCATTGATT--TCTTTAT---TC     39
                     ||||||||.|     |      ||||.||.|  |.|  |||||||   |.
BPUM_2383___g      1 ATGAAAAAAA-----TGAAACGCTTTGGCCT--ACTACTCTTTATGACTT     43

BSNT_03983___     40 GCTGTCATCTTGCTTGCCGC-TTGCAGCAGCAAG-GGA-----TCAAACG     82
                     |||||       .||||||| ||  |.||||..| |||     |.|||  
BPUM_2383___g     44 GCTGT-------ATTGCCGCATT--AACAGCTTGCGGATTTGCTGAAA--     82

BSNT_03983___     83 GAGAAGCCTCAAAGGAGAGCAAAA-----AAGATACGCTAGCCGCCAT--    125
                        |||.|||.|..|| .||||||     ||| |.|..|||...||||  
BPUM_2383___g     83 ---AAGGCTCGACTGA-TGCAAAACAAGGAAG-TTCTTTAGAAACCATCC    127

BSNT_03983___    126 -TAAAGACAATGACAAAATTG-TCTTCGGCGTAAAAACGGACACTCGACT    173
                      .||||||||    ||||.|| |.|||||.||.||.|..||.||.||.||
BPUM_2383___g    128 AGAAAGACAA----AAAAATGATTTTCGGGGTCAAGAATGATACACGTCT    173

BSNT_03983___    174 GTTCGGTCTTAAAAATCCAAGCTCAGGTGAGATTGAGGGTTTTGATATTG    223
                     .||||||||.||||||||||||...||.||.|||||.||.||||||||.|
BPUM_2383___g    174 CTTCGGTCTAAAAAATCCAAGCAGCGGAGATATTGAAGGGTTTGATATCG    223

BSNT_03983___    224 ATATTGCCAAACAAATCGCTAAAGACATTTTAGTTGATGAGAAAAAAGCT    273
                     |||||||.|||...|||||.||.||.||..|.|.||||||...||||||.
BPUM_2383___g    224 ATATTGCAAAAGCCATCGCAAAGGAAATACTCGGTGATGAAGGAAAAGCA    273

BSNT_03983___    274 GAATTTAAAGAGGTCACCTCAAAAACAAGGATTCCTATGCTGCAAAACGG    323
                     |||||.|||||.||.||.||.|||||.||.||||||.|.||||||||.||
BPUM_2383___g    274 GAATTCAAAGAAGTGACATCCAAAACGAGAATTCCTTTACTGCAAAAAGG    323

BSNT_03983___    324 GGATATCGACGCCATTGTCGCCACAATGACGATCACTGATGAACGAAAAA    373
                     .|||||..|.||.||.|||||.||.|||||.||.|||||.||.||.||||
BPUM_2383___g    324 AGATATTCATGCAATCGTCGCAACCATGACAATTACTGAAGAGCGTAAAA    373

BSNT_03983___    374 AGGAAGTTGACTTTTCTGATGTCTATTTCGAGGCCGGGCAATCGCTTCTC    423
                     |.|||||..|.||.||.|||||.||.||.||.||.||.|||||.||.||.
BPUM_2383___g    374 AAGAAGTCAATTTCTCAGATGTTTACTTTGAAGCAGGACAATCACTGCTT    423

BSNT_03983___    424 GTGAAAAAAGGCAGCAA-----AATCAAGAGTGTCGAGGATCTTG-ACAA    467
                     |||||||||||.|||.|     ||||||     |.||.||| ||| |.||
BPUM_2383___g    424 GTGAAAAAAGGAAGCGACATTCAATCAA-----TTGATGAT-TTGAAGAA    467

BSNT_03983___    468 AGGCTCAAAAGTTCTTGCAGTAAAAGGCTCCACCTCCTCTCAAAACATTC    517
                     |||..|.|||||.||||||||.|||||.||.||.||.||||||||.||.|
BPUM_2383___g    468 AGGAACGAAAGTGCTTGCAGTGAAAGGATCTACTTCTTCTCAAAATATCC    517

BSNT_03983___    518 GTGAAAAGGCGCCTGAAGCATCTGTTTTAGAATTTGAAAACTACGCA-GA    566
                     |.|||||.||.||||||||.|||||.|||||||||||.||||| .|| ||
BPUM_2383___g    518 GCGAAAAAGCACCTGAAGCGTCTGTATTAGAATTTGAGAACTA-TCAGGA    566

BSNT_03983___    567 AGCCTTTACAGCCCTTAAATC------GGGGCAAGGCGATGCCCTCACCA    610
                     |||.||||||||..|.|||||      .|||||||    ||  ||.||.|
BPUM_2383___g    567 AGCTTTTACAGCTTTAAAATCAAATCAAGGGCAAG----TG--CTGACAA    610

BSNT_03983___    611 CAGATAATGCGATTTTATATGGAATGGCTGATGAAAATAAAAATTATCAA    660
                     |.|||||||||||.||||.|||.|||||.|||||..||..||||||..||
BPUM_2383___g    611 CTGATAATGCGATCTTATTTGGTATGGCAGATGAGGATTCAAATTACGAA    660

BSNT_03983___    661 TTAAC-----AGGAAAGCCTTTTACAGATGAGCCTTACGGGATCGCCGTG    705
                     .|  |     .||.|   |.|||||||||||||||||.||.||.||.||.
BPUM_2383___g    661 GT--CGTCGGCGGCA---CCTTTACAGATGAGCCTTATGGCATTGCTGTC    705

BSNT_03983___    706 AAAAAAGGGCAATCTGCTCTCGCGAAAGAAATCAAC----GCTTCACTTA    751
                     ||.|||||      ||.|       |||.|||.|||    ||  || |||
BPUM_2383___g    706 AAGAAAGG------TGAT-------AAGGAATTAACAACGGC--CA-TTA    739

BSNT_03983___    752 A-AAAG--ATGAAGTCGGAT------------GGCAGATACGATGAAATT    786
                     | ||||  .|.|||.|  ||            ||.|| ||.||..|.|||
BPUM_2383___g    740 ATAAAGCCCTAAAGAC--ATTAAAAGACAATGGGGAG-TATGACAAGATT    786

BSNT_03983___    787 TATAAAAAATGGATCAAAGAAGACCCAGCTGAATAA    822
                     .||.||||||||||||||            .|||||
BPUM_2383___g    787 CATCAAAAATGGATCAAA------------AAATAA    810


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03983 and BPUM_2383

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
