Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01760 and BPUM_2376
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:16
# Commandline: needle
# -asequence dna-align/BSNT_01760___yhfU.1.24716.seq
# -bsequence dna-align/BPUM_2376___yhfU.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01760___yhfU-BPUM_2376___yhfU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01760___yhfU-BPUM_2376___yhfU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01760___yhfU
# 2: BPUM_2376___yhfU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 613
# Identity: 369/613 (60.2%)
# Similarity: 369/613 (60.2%)
# Gaps: 98/613 (16.0%)
# Score: 919.0
#
#
#=======================================
BSNT_01760___ 1 ATGCTGA-AATT-AATCGACATGATGCATATTGCGATTTTCACCGCGCTG 48
.||| |||| || ||.||||||||.||.|||.|..|.||.|||.|.
BPUM_2376___y 1 ---TTGAGAATTCAA--GATATGATGCAAATGGCGTTAATGACTGCGGTT 45
BSNT_01760___ 49 A-TGGCAGTGCTCGGCTTTATGCCCCCTCTCTT-CTTATCCTTTACACCT 96
| |||.| ||.|.||.||.||.||.||..|.|| |||| |.|||||||||
BPUM_2376___y 46 ATTGGGA-TGTTAGGGTTGATCCCACCGATTTTACTTA-CGTTTACACCT 93
BSNT_01760___ 97 GTTCCGATTACATTGCAAACACTTGGTGT----CATGTTGGCAGGCAGCA 142
|||||.||.||.||||||||....|||.| |.||.|||..|||
BPUM_2376___y 94 GTTCCCATCACGTTGCAAACGGCAGGTCTTTTGCTTGCTGGTGGGC---- 139
BSNT_01760___ 143 TTCTCAGGCCAAA----------GTCTGCTTTCTTAAGCCAGCTTGTCTT 182
|..|.|.|||||| .||.|.||.||| |.|.||.|||
BPUM_2376___y 140 TATTAAAGCCAAAACAGGCACTGATCAGTTTACTT----CTGTTTCTCT- 184
BSNT_01760___ 183 TTTGCTGCTCGTCGCCTTCGGAGCGCCGCTGTTGCCCGGCGGACGAGGCG 232
||.|.||.||....||.||.||.||.|||.|.||.|...||||||
BPUM_2376___y 185 -----TGGTTGTGGCAGCAGGCGCACCTCTTTTGTCAGGTGCCAGAGGCG 229
BSNT_01760___ 233 GTTTTGGTGTGTTTTTCGGACCGAGCGCAGGCTTTTTGATTGCTTATCC- 281
|..|.||.||.|||||.|||||.||||..||.|||||..||||||||||
BPUM_2376___y 230 GGATAGGGGTCTTTTTTGGACCAAGCGGTGGATTTTTACTTGCTTATCCA 279
BSNT_01760___ 282 ---CCTCGCTTCATGGCTGATCAGTTTAGCCGCT-AACAGGCTGCGGAAG 327
.||..|.||| ||||.||||| |..|.| |||.|.||.|..||.
BPUM_2376___y 280 GCGGCTGCCCTCA----TGATTAGTTT-GTGGATCAACCGACTACAAAAA 324
BSNT_01760___ 328 GTGACAGTATTGCGTCTCTTTTTCACTC------ATAT--CGTATTCGGC 369
|||||....||||||||.|||.|.| || |||| .||| ||||.
BPUM_2376___y 325 GTGACCACCTTGCGTCTTTTTGTGA-TCTTTGCGATATGCAGTA-TCGGA 372
BSNT_01760___ 370 ATCATCTTTATTTATCTGCTTGGTATTCCGGTACAAGCTTTTATCATGCA 419
|| |||.|.|.|.||| ||.|||||..|.|||||..|.||||||.|
BPUM_2376___y 373 AT----TTTGTATCTATGC--GGCATTCCTTTTCAAGCGATGATCATGAA 416
BSNT_01760___ 420 TATTGATTTGTCA--CAGGCCGC-CTTCATGAGCCTTGCATATGTGCCTG 466
|||..| .|||| |||||.|| |||| |.||.||....|||.|.||.|
BPUM_2376___y 417 TATCAA--GGTCACTCAGGCAGCTCTTC-TTAGTCTGATTTATATTCCAG 463
BSNT_01760___ 467 GTGATTTGATAAAAGC-GGCTGTATCTGCATTTCTGGCGATAAAAATCAC 515
|||||.|.||.||.|| ||| .|||.|||..||||..||.|.|||||||
BPUM_2376___y 464 GTGATCTCATCAAGGCAGGC-ATATGTGCCGTTCTCACGGTGAAAATCA- 511
BSNT_01760___ 516 TCAAGCCTTGTCTCTTTCTGATA---------CGATGTTTACAAAAGGAG 556
|||...||.|.|.||| .|||||..|.|||.||||
BPUM_2376___y 512 -------TTGCGGCTATGTCATATCGAAAAAGGGATGTGAATAAAGGGAG 554
BSNT_01760___ 557 G--------ATGA 561
| .|||
BPUM_2376___y 555 GCGTGCAGTTTGA 567
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