Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03973 and BPUM_2373
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:27
# Commandline: needle
# -asequence dna-align/BSNT_03973___yrrL.1.24716.seq
# -bsequence dna-align/BPUM_2373___yrrL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03973___yrrL-BPUM_2373___yrrL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03973___yrrL-BPUM_2373___yrrL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03973___yrrL
# 2: BPUM_2373___yrrL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1160
# Identity: 754/1160 (65.0%)
# Similarity: 754/1160 (65.0%)
# Gaps: 154/1160 (13.3%)
# Score: 2191.0
#
#
#=======================================
BSNT_03973___ 1 ATGTATATCAATCAG--CAAAAAAAATCG----TTTTTTAATAAAAAAA- 43
||||.| |||| |||||.||| || |||||.||.|..||||
BPUM_2373___y 1 ATGTTT-----TCAGAACAAAAGAAA-CGACCATTTTTCAAAAGGAAAAT 44
BSNT_03973___ 44 --GAATCATACTGTCTTCCATTGTT-GTGCTGTTTC-TCATCATTGGCGG 89
|.|||.|.||||..|| |||| .||||| || |||||||| ||.|
BPUM_2373___y 45 GGGGATCGTCCTGTTATC---TGTTCTTGCTG--TCATCATCATT-GCAG 88
BSNT_03973___ 90 --------GGCATTTTTATATGGGAAATCATTGCTTGAACCTGTTGAAAA 131
||| ||||||||||..||||||...||||.|||.||.||..|
BPUM_2373___y 89 CATTATCAGGC-TTTTTATATGTTAAATCAGCACTTGGACCGGTCGATCA 137
BSNT_03973___ 132 AGACAGTA---AAACGACAGTTAATATTAACATTCCGAGCGGTTCGTCTG 178
|.|.|||| |||||| ||||||||.|.|||||.|..||..|.||||
BPUM_2373___y 138 AAAAAGTAAACAAACGA---TTAATATTCATATTCCTAATGGGACATCTG 184
BSNT_03973___ 179 TTTCAGCC-----ATCGCATCGATATTAAAGAAAAATG-----ATGTC-- 216
| || ||.||....||.|||||..|||||| ||.||
BPUM_2373___y 185 T-----CCGTGAGATTGCGGGCATTTTAAAAGAAAATGGGCTCATTTCGA 229
BSNT_03973___ 217 ATAAAAAGCGAGAAGGCGTTTCA-GTACTATGTGAAATATAAAGGTGCTT 265
||.|.| ||| .||||| .||.||||..|||||.|||...||.|
BPUM_2373___y 230 ATGACA--CGA------TTTTCACTTATTATGCAAAATACAAAAACGCGT 271
BSNT_03973___ 266 CCGGGTTTCAGGCCGGATTCTACCATCT-AAATAAAGGTATGGATTTAGA 314
||||.|||.|.||.||||.||..|||.| |||.|||.| |||||...|||
BPUM_2373___y 272 CCGGCTTTAAAGCGGGATACTTTCATTTGAAACAAACG-ATGGACGCAGA 320
BSNT_03973___ 315 TGCCATTATTCAGAAGCTGACAAGTGGGGCTACAGGTTACGCTTTTCAAA 364
..|..|.|||||.|||||||||..|||.|..||||..||.||.|||||..
BPUM_2373___y 321 CACGCTGATTCAAAAGCTGACATCTGGAGGGACAGACTATGCCTTTCAGC 370
BSNT_03973___ 365 TCACAGTGA---CTGAGGGAGCACAGCTGACCCAAATCGCGGCTGCTATT 411
| .|||| |.||.|||..|||||||.|..|.||.|||||.|..|||
BPUM_2373___y 371 T---TGTGATTCCAGAAGGAAAACAGCTGTCTGATATTGCGGCAGTGATT 417
BSNT_03973___ 412 GCTGATGAAACAA----AATACTCTAAA---AAACAAGTCATAGCGAAGC 454
|| ||||.| ||| |.|..| |||.||||...||||||||
BPUM_2373___y 418 GC-----AAACCAGACGAAT--TTTTCAGCGAAAGAAGTGGAAGCGAAGC 460
BSNT_03973___ 455 TGGACGATGAAACATTTATCAATCAGC--TGAAGAAAGAATTCCCGGACA 502
||||.|||....|.|||||||| |.| |.|.||||.|||..|||.|.|
BPUM_2373___y 461 TGGATGATCCTGCGTTTATCAA--AACATTAATGAAAAAATATCCGAAAA 508
BSNT_03973___ 503 CTGTGACAAATGATGTTTTCA---ATAA-----AAACA--TTAAGCACCC 542
|.|||||| ||| .||| ||||| |.||.||.||
BPUM_2373___y 509 CGGTGACA----------TCACAGGTAAATGGCAAACAGGTGAAACATCC 548
BSNT_03973___ 543 GCTTGAAGGGTACCTATTCCCGGCTACATA-CCCTTTTAACGATCCGGAC 591
|.|.|||||.||..|||||||.||.||.|| ||.|||||.|| |..|||.
BPUM_2373___y 549 GTTAGAAGGTTATTTATTCCCTGCGACGTATCCATTTTATCG-TGAGGAT 597
BSNT_03973___ 592 ACATCACTTGAAGAC-ATTATCAAGGCAATGATTAAGCAGACAAATTCTT 640
..||||||.||| || ||.||..|..|.||||||||.||.|||.||...|
BPUM_2373___y 598 GAATCACTCGAA-ACGATCATTGAAACGATGATTAAACAAACAGATCAAT 646
BSNT_03973___ 641 ATGTGGAAACATATAAATCAGAAATG---AAGAAAAACAAAGTTTCTGTG 687
|.|||.||||.|||.||..|||.||| ||||.||||| |||.
BPUM_2373___y 647 ACGTGAAAACGTATGAAAAAGACATGAAAAAGAGAAACA-------TGTC 689
BSNT_03973___ 688 CATA----AGCTGCTGACAATGGCTTCTTTGATAGAAGAAGAAGCGACTG 733
|||| |..||.|.||.|||||.||..||||.|||...|||||.||.|
BPUM_2373___y 690 CATACATGATGTGTTAACGATGGCATCACTGATTGAAATGGAAGCAACGG 739
BSNT_03973___ 734 AAAAAGCCGACCGC-CATAAAATTGCGAGCGTCTTTTATAACCGCCTGAA 782
||||..|.||.||| || |||||..|.||.||.|||||||||||..||||
BPUM_2373___y 740 AAAAGACGGATCGCGCA-AAAATCTCCAGTGTTTTTTATAACCGGTTGAA 788
BSNT_03973___ 783 AAAGAAAATGCCGCTCCAAACAGATCCGACCGTCCTGTACGCGGCAGGCA 832
||||.|.||||||||.|||||.|||||.||.||.||.||.||...|||..
BPUM_2373___y 789 AAAGGACATGCCGCTTCAAACCGATCCAACGGTTCTTTATGCACTAGGTG 838
BSNT_03973___ 833 AGCATAAAGATCGGGTTCTTTATAAGGATCT-----GGAAATCGATTCAC 877
||||||||...||.|||..|||.||.||.|| .|||| ||.|
BPUM_2373___y 839 AGCATAAATCCCGAGTTTATTACAAAGACCTTAAGGTGAAA-----TCTC 883
BSNT_03973___ 878 CATACAATACGTATAAAAACACAGGG-CTGACGCCAGGGCCGATTGCCAA 926
|.||.|||||||||||.|||| |||| |||.||||.||.||.|||||.||
BPUM_2373___y 884 CTTATAATACGTATAACAACA-AGGGACTGCCGCCTGGACCTATTGCAAA 932
BSNT_03973___ 927 TGCCGGCATGTCGTCATGGGAAGCGGCGCTGCATCCGGATAAAACGGACT 976
|||.|||...||.||||||.||||.||.||||||||.||.||||||||.|
BPUM_2373___y 933 TGCTGGCGAATCTTCATGGAAAGCCGCACTGCATCCAGAGAAAACGGATT 982
BSNT_03973___ 977 ATCTGTATTTCTTGGCCAAATCAAATGGTGAGGTCGTATTTACAAAAACG 1026
||.|.||.|||.|.||.||...|||.||.||.|||||.||||||||||||
BPUM_2373___y 983 ATGTATACTTCCTTGCGAAGAAAAACGGAGAAGTCGTCTTTACAAAAACG 1032
BSNT_03973___ 1027 CTAAAAGAGCATAATAAAGCAAAAGAAAAATACATTTCCTCAAAAAATG- 1075
.||||.|||||.||.|||||.||||..||||||| |||.| |
BPUM_2373___y 1033 TTAAATGAGCACAACAAAGCGAAAGCCAAATACA-----TCACA----GG 1073
BSNT_03973___ 1076 -AG-AAATAA 1083
|| ||.|||
BPUM_2373___y 1074 CAGCAAGTAA 1083
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