Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03971 and BPUM_2372
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:27
# Commandline: needle
# -asequence dna-align/BSNT_03971___yrrM.1.24716.seq
# -bsequence dna-align/BPUM_2372___yrrM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03971___yrrM-BPUM_2372___yrrM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03971___yrrM-BPUM_2372___yrrM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03971___yrrM
# 2: BPUM_2372___yrrM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity: 468/707 (66.2%)
# Similarity: 468/707 (66.2%)
# Gaps: 94/707 (13.3%)
# Score: 1442.5
#
#
#=======================================
BSNT_03971___ 1 GTGACTGACCG--GTATGAACAAATAAATGACTATATAGAAGCATTATTA 48
.||||| |.|| | ||||.|||||.|||||.|||||.||| ||| |||
BPUM_2372___y 1 ATGACT-ATCGAAG-ATGATCAAATGAATGATTATATTGAA-CAT--TTA 45
BSNT_03971___ 49 A---AGCCTCGGCCGGAT---AACG-TGAAGAAGCTT-GAAGCATATGCA 90
| |.||..|.||.||| |.|| |.|| || ||.|||||||||
BPUM_2372___y 46 ATTCACCCAAGTCCTGATGCAATCGCTCAA-----TTAGAGGCATATGCA 90
BSNT_03971___ 91 GAAGAACATCATGTCCCGATTATGGAAAAAGCGGGCATGGAGGTGCTGCT 140
.||||.||||||||.||.|||||||||||.|.|.||||.||..|..|.||
BPUM_2372___y 91 AAAGAGCATCATGTGCCCATTATGGAAAAGGTGAGCATTGAACTTTTACT 140
BSNT_03971___ 141 TCAAATTTTGTCTGTGAAACAGCCGAAAAAAATACTAGAAATCGGAACGG 190
.||..|..||||..|||||.|||||||.|||||.||.||..|.||.||.|
BPUM_2372___y 141 GCAGCTACTGTCGATGAAAAAGCCGAAGAAAATTCTTGAGGTTGGGACAG 190
BSNT_03971___ 191 CCATTGGTTATTCAGCCATTCGGATGGC----GCTGGAGCTGCCGTCTGC 236
|.||.||.||.||.||||||||.||||| ||| ||.||...|||
BPUM_2372___y 191 CGATAGGCTACTCCGCCATTCGAATGGCGACAGCT----CTACCAGATGC 236
BSNT_03971___ 237 TGAAATATATACAATTGAACGCAATGAGAAACGGCATGAAGAAGCGGTAA 286
||||||.|.|||.|||||.||.||.|..|||||..||||||||||| |.
BPUM_2372___y 237 TGAAATTTTTACGATTGAGCGAAACGCAAAACGCTATGAAGAAGCG--AC 284
BSNT_03971___ 287 AC--AATATCAAGGAATTTCAGCTTGATGACCGGATTCA--TGTTTTTTA 332
|| ||.||..|||||||..||.|..|.||..|.||.|| ||||.|||
BPUM_2372___y 285 ACGGAACATTGAGGAATTAAAGTTAAAAGAAAGAATACACGTGTTCTTT- 333
BSNT_03971___ 333 CGGAGATGCGCTTGAATTAGCCGACGCCGTTCATGTAAC---CGCGCCTT 379
||.|||||..|.||||..||..|..|.||.|| ||| .|||||.|
BPUM_2372___y 334 -GGTGATGCCATGGAATCGGCTAAAACAGTCCA---AACGATGGCGCCCT 379
BSNT_03971___ 380 ACGATGTCATTTTTATTGACGCTGCAAAAGGTCAGTATCAAAAC--TTTT 427
|.|||||.||.||||||||.||.||||||||.||||| .|||| ||||
BPUM_2372___y 380 ATGATGTGATCTTTATTGATGCCGCAAAAGGGCAGTA--CAAACGTTTTT 427
BSNT_03971___ 428 TTCATTTATATGAACCGATGCTTTCACCGGACGGGGTGATTATAACAGAC 477
||.|..|.|.|||||||||||||.|.|..|||||..|||||||.||||||
BPUM_2372___y 428 TTGAGCTGTTTGAACCGATGCTTGCTCATGACGGAATGATTATTACAGAC 477
BSNT_03971___ 478 AACGTGCTGTTTAAAGGTCTGGTGGCAGAGGATTA--CAGCA-AAATAGA 524
|||||..|.|||||||||.|.||||||..|.|.|| .||.| |||||||
BPUM_2372___y 478 AACGTATTATTTAAAGGTTTAGTGGCAACGAACTATGAAGAAGAAATAGA 527
BSNT_03971___ 525 ACCGAAGAGAA--------------GGCGCAGGCTTGTAGCAAAAATTGA 560
|...||.|||| || .||||||||
BPUM_2372___y 528 AGATAAAAGAAAAAAACAATTAATTGG--------------TAAAATTGA 563
BSNT_03971___ 561 TGAATATAATCATTGGCTGATGAATC--ATCCGGATTATCAAAC-TGCGA 607
|..|||.|||||.|||||.||| || |.||.||||..||||| || .|
BPUM_2372___y 564 TCGATACAATCAATGGCTTATG--TCAAACCCCGATTTCCAAACGTG-TA 610
BSNT_03971___ 608 TTATTCCTGTCGGGGACGGACTTGCGATTAGTAAAAAGAAGAGGTGA--- 654
|||||||.||.||.|||||..|.||.|||||||.||| |||||||||
BPUM_2372___y 611 TTATTCCAGTTGGAGACGGGATCGCCATTAGTACAAA-AAGAGGTGACCA 659
BSNT_03971___ 654 ------- 654
BPUM_2372___y 660 ATCATGA 666
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