Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03971 and BPUM_2372

See Amino acid alignment / Visit BSNT_03971 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:27
# Commandline: needle
#    -asequence dna-align/BSNT_03971___yrrM.1.24716.seq
#    -bsequence dna-align/BPUM_2372___yrrM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03971___yrrM-BPUM_2372___yrrM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03971___yrrM-BPUM_2372___yrrM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03971___yrrM
# 2: BPUM_2372___yrrM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 707
# Identity:     468/707 (66.2%)
# Similarity:   468/707 (66.2%)
# Gaps:          94/707 (13.3%)
# Score: 1442.5
# 
#
#=======================================

BSNT_03971___      1 GTGACTGACCG--GTATGAACAAATAAATGACTATATAGAAGCATTATTA     48
                     .||||| |.||  | ||||.|||||.|||||.|||||.||| |||  |||
BPUM_2372___y      1 ATGACT-ATCGAAG-ATGATCAAATGAATGATTATATTGAA-CAT--TTA     45

BSNT_03971___     49 A---AGCCTCGGCCGGAT---AACG-TGAAGAAGCTT-GAAGCATATGCA     90
                     |   |.||..|.||.|||   |.|| |.||     || ||.|||||||||
BPUM_2372___y     46 ATTCACCCAAGTCCTGATGCAATCGCTCAA-----TTAGAGGCATATGCA     90

BSNT_03971___     91 GAAGAACATCATGTCCCGATTATGGAAAAAGCGGGCATGGAGGTGCTGCT    140
                     .||||.||||||||.||.|||||||||||.|.|.||||.||..|..|.||
BPUM_2372___y     91 AAAGAGCATCATGTGCCCATTATGGAAAAGGTGAGCATTGAACTTTTACT    140

BSNT_03971___    141 TCAAATTTTGTCTGTGAAACAGCCGAAAAAAATACTAGAAATCGGAACGG    190
                     .||..|..||||..|||||.|||||||.|||||.||.||..|.||.||.|
BPUM_2372___y    141 GCAGCTACTGTCGATGAAAAAGCCGAAGAAAATTCTTGAGGTTGGGACAG    190

BSNT_03971___    191 CCATTGGTTATTCAGCCATTCGGATGGC----GCTGGAGCTGCCGTCTGC    236
                     |.||.||.||.||.||||||||.|||||    |||    ||.||...|||
BPUM_2372___y    191 CGATAGGCTACTCCGCCATTCGAATGGCGACAGCT----CTACCAGATGC    236

BSNT_03971___    237 TGAAATATATACAATTGAACGCAATGAGAAACGGCATGAAGAAGCGGTAA    286
                     ||||||.|.|||.|||||.||.||.|..|||||..|||||||||||  |.
BPUM_2372___y    237 TGAAATTTTTACGATTGAGCGAAACGCAAAACGCTATGAAGAAGCG--AC    284

BSNT_03971___    287 AC--AATATCAAGGAATTTCAGCTTGATGACCGGATTCA--TGTTTTTTA    332
                     ||  ||.||..|||||||..||.|..|.||..|.||.||  ||||.||| 
BPUM_2372___y    285 ACGGAACATTGAGGAATTAAAGTTAAAAGAAAGAATACACGTGTTCTTT-    333

BSNT_03971___    333 CGGAGATGCGCTTGAATTAGCCGACGCCGTTCATGTAAC---CGCGCCTT    379
                      ||.|||||..|.||||..||..|..|.||.||   |||   .|||||.|
BPUM_2372___y    334 -GGTGATGCCATGGAATCGGCTAAAACAGTCCA---AACGATGGCGCCCT    379

BSNT_03971___    380 ACGATGTCATTTTTATTGACGCTGCAAAAGGTCAGTATCAAAAC--TTTT    427
                     |.|||||.||.||||||||.||.||||||||.|||||  .||||  ||||
BPUM_2372___y    380 ATGATGTGATCTTTATTGATGCCGCAAAAGGGCAGTA--CAAACGTTTTT    427

BSNT_03971___    428 TTCATTTATATGAACCGATGCTTTCACCGGACGGGGTGATTATAACAGAC    477
                     ||.|..|.|.|||||||||||||.|.|..|||||..|||||||.||||||
BPUM_2372___y    428 TTGAGCTGTTTGAACCGATGCTTGCTCATGACGGAATGATTATTACAGAC    477

BSNT_03971___    478 AACGTGCTGTTTAAAGGTCTGGTGGCAGAGGATTA--CAGCA-AAATAGA    524
                     |||||..|.|||||||||.|.||||||..|.|.||  .||.| |||||||
BPUM_2372___y    478 AACGTATTATTTAAAGGTTTAGTGGCAACGAACTATGAAGAAGAAATAGA    527

BSNT_03971___    525 ACCGAAGAGAA--------------GGCGCAGGCTTGTAGCAAAAATTGA    560
                     |...||.||||              ||              .||||||||
BPUM_2372___y    528 AGATAAAAGAAAAAAACAATTAATTGG--------------TAAAATTGA    563

BSNT_03971___    561 TGAATATAATCATTGGCTGATGAATC--ATCCGGATTATCAAAC-TGCGA    607
                     |..|||.|||||.|||||.|||  ||  |.||.||||..||||| || .|
BPUM_2372___y    564 TCGATACAATCAATGGCTTATG--TCAAACCCCGATTTCCAAACGTG-TA    610

BSNT_03971___    608 TTATTCCTGTCGGGGACGGACTTGCGATTAGTAAAAAGAAGAGGTGA---    654
                     |||||||.||.||.|||||..|.||.|||||||.||| |||||||||   
BPUM_2372___y    611 TTATTCCAGTTGGAGACGGGATCGCCATTAGTACAAA-AAGAGGTGACCA    659

BSNT_03971___    654 -------    654
                            
BPUM_2372___y    660 ATCATGA    666


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