Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03963 and BPUM_2365

See Amino acid alignment / Visit BSNT_03963 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:26
# Commandline: needle
#    -asequence dna-align/BSNT_03963___yrrS.1.24716.seq
#    -bsequence dna-align/BPUM_2365___yrrS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03963___yrrS-BPUM_2365___yrrS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03963___yrrS-BPUM_2365___yrrS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03963___yrrS
# 2: BPUM_2365___yrrS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 752
# Identity:     464/752 (61.7%)
# Similarity:   464/752 (61.7%)
# Gaps:         136/752 (18.1%)
# Score: 1416.0
# 
#
#=======================================

BSNT_03963___      1 TTGAGCAATAATCAATCTCGTTATGAAAATCGTGATAAACGCAGAAAAGC     50
                     |||||.|..|||   |||||.|.||||.||||||||||.||||||||.||
BPUM_2365___y      1 TTGAGTAGAAAT---TCTCGATTTGAACATCGTGATAAGCGCAGAAAGGC     47

BSNT_03963___     51 CAATTTAGTGCTTAACATTTTAATCGCAATCGTATCCATACTAATTGTCG    100
                     .|||.|.||.||||||||.|||||.|..|||||.....|.||.|||.|.|
BPUM_2365___y     48 GAATATGGTCCTTAACATATTAATTGGTATCGTTGTGGTGCTTATTTTGG     97

BSNT_03963___    101 TAGTAGCAGCGAATCTCTTCATT-------AAC----AGTCCTTCTAGCA    139
                     |.||.|||.|||.|.|.||.|||       |||    ||        .||
BPUM_2365___y     98 TGGTCGCAACGAGTTTATTAATTTTTAATAAACCGAAAG--------ACA    139

BSNT_03963___    140 AAGATGTCAGCAAGGA------TTCTGAAACGGCGCAAAAACAGGAATCT    183
                     .|||||| |||  |||      ||||.||||||||               
BPUM_2365___y    140 CAGATGT-AGC--GGATCCACCTTCTAAAACGGCG---------------    171

BSNT_03963___    184 CCGGCTTCA---GGAAAGACGGAAAAGAAATCGGATGAGGATATAAAAGA    230
                     ||.||..||   |.|||.|   ||.|.|||||.|||||.|||.|.|||||
BPUM_2365___y    172 CCTGCAACAAGTGAAAATA---AACAAAAATCAGATGAAGATGTGAAAGA    218

BSNT_03963___    231 -CAGCAAGAAAGATACATCTGACAGCGAAAAGGATTCTGAGAAGTCTTCT    279
                      || .||||||||.|||||.||                           |
BPUM_2365___y    219 TCA-AAAGAAAGACACATCCGA---------------------------T    240

BSNT_03963___    280 GACTCTGATTCCAAAAAAGATGATTCTTCTTCTAAAAAGGATGATTCTGA    329
                     ||.||.|||.|.|||||||||||.||.|||..|.||.|.||.|||.| ||
BPUM_2365___y    241 GATTCAGATGCTAAAAAAGATGACTCATCTGATCAAGACGACGATAC-GA    289

BSNT_03963___    330 TTCAGATTCAAGCTCAGAT--------TCAGCC----AGTGATGGGCTTA    367
                        ||    ||| ||||||        ..||||    |..||||.|.|.|
BPUM_2365___y    290 ---AG----AAG-TCAGATGATGAAAAAGAGCCTAATAAAGATGCGTTAA    331

BSNT_03963___    368 AAGATGCAAAAGTAACAGAAGGCGGCTCATCGAGCGATGTGGAAAAAACG    417
                     ||||.||.||||.||||||.||||||..|.||||.||.||.||.|||||.
BPUM_2365___y    332 AAGACGCCAAAGAAACAGATGGCGGCAAAACGAGTGACGTAGACAAAACA    381

BSNT_03963___    418 TATGAAAATCCTGACTGGAAAGCAGTCGGAACTGAGCAAACAGGCGAGCA    467
                     ||.||||....|||||||.|..|.||.|||||.||||||.|.||....||
BPUM_2365___y    382 TACGAAAGCGATGACTGGGAGCCTGTAGGAACAGAGCAATCCGGTTCACA    431

BSNT_03963___    468 TGCCGCTACTTATGATTCAAGCTCGCAAGACTGGGCTGAGATGCTGAAAG    517
                     |.|.||.||.||||||||.|..||..||||||||...||.|||.||||||
BPUM_2365___y    432 TACAGCAACCTATGATTCTAATTCAAAAGACTGGAAAGAAATGATGAAAG    481

BSNT_03963___    518 CCATTTCATACGCAACTGGTGTCTCAACAGATAACATGACGGTGCTCTGG    567
                     ||||.||.||.||.||.||..|.|||..||||.|.|||||.||..|.|||
BPUM_2365___y    482 CCATGTCCTATGCGACGGGAATTTCAGAAGATCAAATGACCGTTATTTGG    531

BSNT_03963___    568 CTTGGAAATAACGGCAGCCCTCAGGATGCCAAAGGCAA-GATTTTGGACA    616
                     .|.|||||||||||..|||||||.|||| ||||||.|| .||....||||
BPUM_2365___y    532 TTAGGAAATAACGGAGGCCCTCAAGATG-CAAAGGGAACCATCCGTGACA    580

BSNT_03963___    617 -------AGGCGA---------CTGGGAATAAATATCAAGTCACGATTAC    650
                            ||||||         |..||||                ||.||
BPUM_2365___y    581 AATCAACAGGCGAACGCTACCGCGTGGAA----------------ATCAC    614

BSNT_03963___    651 ATGGGTCGATGAAAAAGGCTGGAAGCCGACAAAAGTAGAAAAGCTAAAAT    700
                     ||||||.|||||||||||||||||.||...|||.||.||.||..||||||
BPUM_2365___y    615 ATGGGTAGATGAAAAAGGCTGGAAACCTGTAAAGGTTGAGAAATTAAAAT    664

BSNT_03963___    701 AA    702
                     ||
BPUM_2365___y    665 AA    666


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