Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03963 and BPUM_2365
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:26
# Commandline: needle
# -asequence dna-align/BSNT_03963___yrrS.1.24716.seq
# -bsequence dna-align/BPUM_2365___yrrS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03963___yrrS-BPUM_2365___yrrS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03963___yrrS-BPUM_2365___yrrS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03963___yrrS
# 2: BPUM_2365___yrrS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 752
# Identity: 464/752 (61.7%)
# Similarity: 464/752 (61.7%)
# Gaps: 136/752 (18.1%)
# Score: 1416.0
#
#
#=======================================
BSNT_03963___ 1 TTGAGCAATAATCAATCTCGTTATGAAAATCGTGATAAACGCAGAAAAGC 50
|||||.|..||| |||||.|.||||.||||||||||.||||||||.||
BPUM_2365___y 1 TTGAGTAGAAAT---TCTCGATTTGAACATCGTGATAAGCGCAGAAAGGC 47
BSNT_03963___ 51 CAATTTAGTGCTTAACATTTTAATCGCAATCGTATCCATACTAATTGTCG 100
.|||.|.||.||||||||.|||||.|..|||||.....|.||.|||.|.|
BPUM_2365___y 48 GAATATGGTCCTTAACATATTAATTGGTATCGTTGTGGTGCTTATTTTGG 97
BSNT_03963___ 101 TAGTAGCAGCGAATCTCTTCATT-------AAC----AGTCCTTCTAGCA 139
|.||.|||.|||.|.|.||.||| ||| || .||
BPUM_2365___y 98 TGGTCGCAACGAGTTTATTAATTTTTAATAAACCGAAAG--------ACA 139
BSNT_03963___ 140 AAGATGTCAGCAAGGA------TTCTGAAACGGCGCAAAAACAGGAATCT 183
.|||||| ||| ||| ||||.||||||||
BPUM_2365___y 140 CAGATGT-AGC--GGATCCACCTTCTAAAACGGCG--------------- 171
BSNT_03963___ 184 CCGGCTTCA---GGAAAGACGGAAAAGAAATCGGATGAGGATATAAAAGA 230
||.||..|| |.|||.| ||.|.|||||.|||||.|||.|.|||||
BPUM_2365___y 172 CCTGCAACAAGTGAAAATA---AACAAAAATCAGATGAAGATGTGAAAGA 218
BSNT_03963___ 231 -CAGCAAGAAAGATACATCTGACAGCGAAAAGGATTCTGAGAAGTCTTCT 279
|| .||||||||.|||||.|| |
BPUM_2365___y 219 TCA-AAAGAAAGACACATCCGA---------------------------T 240
BSNT_03963___ 280 GACTCTGATTCCAAAAAAGATGATTCTTCTTCTAAAAAGGATGATTCTGA 329
||.||.|||.|.|||||||||||.||.|||..|.||.|.||.|||.| ||
BPUM_2365___y 241 GATTCAGATGCTAAAAAAGATGACTCATCTGATCAAGACGACGATAC-GA 289
BSNT_03963___ 330 TTCAGATTCAAGCTCAGAT--------TCAGCC----AGTGATGGGCTTA 367
|| ||| |||||| ..|||| |..||||.|.|.|
BPUM_2365___y 290 ---AG----AAG-TCAGATGATGAAAAAGAGCCTAATAAAGATGCGTTAA 331
BSNT_03963___ 368 AAGATGCAAAAGTAACAGAAGGCGGCTCATCGAGCGATGTGGAAAAAACG 417
||||.||.||||.||||||.||||||..|.||||.||.||.||.|||||.
BPUM_2365___y 332 AAGACGCCAAAGAAACAGATGGCGGCAAAACGAGTGACGTAGACAAAACA 381
BSNT_03963___ 418 TATGAAAATCCTGACTGGAAAGCAGTCGGAACTGAGCAAACAGGCGAGCA 467
||.||||....|||||||.|..|.||.|||||.||||||.|.||....||
BPUM_2365___y 382 TACGAAAGCGATGACTGGGAGCCTGTAGGAACAGAGCAATCCGGTTCACA 431
BSNT_03963___ 468 TGCCGCTACTTATGATTCAAGCTCGCAAGACTGGGCTGAGATGCTGAAAG 517
|.|.||.||.||||||||.|..||..||||||||...||.|||.||||||
BPUM_2365___y 432 TACAGCAACCTATGATTCTAATTCAAAAGACTGGAAAGAAATGATGAAAG 481
BSNT_03963___ 518 CCATTTCATACGCAACTGGTGTCTCAACAGATAACATGACGGTGCTCTGG 567
||||.||.||.||.||.||..|.|||..||||.|.|||||.||..|.|||
BPUM_2365___y 482 CCATGTCCTATGCGACGGGAATTTCAGAAGATCAAATGACCGTTATTTGG 531
BSNT_03963___ 568 CTTGGAAATAACGGCAGCCCTCAGGATGCCAAAGGCAA-GATTTTGGACA 616
.|.|||||||||||..|||||||.|||| ||||||.|| .||....||||
BPUM_2365___y 532 TTAGGAAATAACGGAGGCCCTCAAGATG-CAAAGGGAACCATCCGTGACA 580
BSNT_03963___ 617 -------AGGCGA---------CTGGGAATAAATATCAAGTCACGATTAC 650
|||||| |..|||| ||.||
BPUM_2365___y 581 AATCAACAGGCGAACGCTACCGCGTGGAA----------------ATCAC 614
BSNT_03963___ 651 ATGGGTCGATGAAAAAGGCTGGAAGCCGACAAAAGTAGAAAAGCTAAAAT 700
||||||.|||||||||||||||||.||...|||.||.||.||..||||||
BPUM_2365___y 615 ATGGGTAGATGAAAAAGGCTGGAAACCTGTAAAGGTTGAGAAATTAAAAT 664
BSNT_03963___ 701 AA 702
||
BPUM_2365___y 665 AA 666
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