Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03961 and BPUM_2363
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:26
# Commandline: needle
# -asequence dna-align/BSNT_03961___yrrT.1.24716.seq
# -bsequence dna-align/BPUM_2363___yrrT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03961___yrrT-BPUM_2363___yrrT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03961___yrrT-BPUM_2363___yrrT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03961___yrrT
# 2: BPUM_2363___yrrT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 703
# Identity: 434/703 (61.7%)
# Similarity: 434/703 (61.7%)
# Gaps: 122/703 (17.4%)
# Score: 1218.5
#
#
#=======================================
BSNT_03961___ 1 ATGGGACGTGAATTTATCCCTCTCTTTGAAGATTGGGCAGCAACTTATGA 50
|||||||||||.|||.|..||.|.|||||..|||||||.|...|||||||
BPUM_2363___y 1 ATGGGACGTGAGTTTCTTTCTTTATTTGATCATTGGGCTGACTCTTATGA 50
BSNT_03961___ 51 CCAAACAGTACAAGGTTTAGATATTCAGTATAAAGAAGCGTTCAGAGGCT 100
|.|.||.|||...|||...|||...||||||.||||||..||..|..|.|
BPUM_2363___y 51 CGACACGGTAAGTGGTCATGATGAGCAGTATGAAGAAGTATTTCGCCGGT 100
BSNT_03961___ 101 ATGATCATATCCTTGAT-------GCCATCG-TCA----GCAAATCTGGA 138
|| ||..|||| |..||.| ||| |||..|| |
BPUM_2363___y 101 AT-------TCGGTGATTTTAAAAGAAATTGTTCACCGCGCAGGTC---A 140
BSNT_03961___ 139 ACGCATGTGTTAGAATTTGGCCCTGGGACAGGGAATTTGACGGCTAAGCT 188
| |||||..|.||||||||....||.||.||||||.|.||.||....||
BPUM_2363___y 141 A--CATGTTCTTGAATTTGGAAGCGGCACGGGGAATCTAACAGCGGCACT 188
BSNT_03961___ 189 GCTCGATGCAGGCAA-AACTGTATTTGGAATCGAACCTTCTCCAGCAATG 237
|||||..||.|..|| ||| ||||||||..|.|||||.||....||.|||
BPUM_2363___y 189 GCTCGCAGCTGATAAGAAC-GTATTTGGTGTTGAACCATCAGACGCCATG 237
BSNT_03961___ 238 CGTAAA----CTGGCTTCTGACAAGCTTTCAGGCAGGTCGGAA------A 277
...||| || |||| |.||| |||| |
BPUM_2363___y 238 AAGAAAGCAGCT--CTTC--AAAAG--------------GGAATACCCGA 269
BSNT_03961___ 278 TCGT------TGATGGAGACTTCCTGACATTCCCTGAGCCGCCATTTCAG 321
| || ||||||.||.||..|..||||.||.|..|||||||||.||
BPUM_2363___y 270 T-GTGTTTCATGATGGCGATTTTTTATCATTTCCAGCACCGCCATTTGAG 318
BSNT_03961___ 322 GCTGATACAATTGTCAGTTCATATGCTTTTCATCATTTGACTGACGAAGA 371
.|.|||||.||.||||||||||||||.||.||.|||||.||.||||||||
BPUM_2363___y 319 CCGGATACGATCGTCAGTTCATATGCATTCCACCATTTAACGGACGAAGA 368
BSNT_03961___ 372 AAAGCGGGCTGCCATAAAGCAA------------TATGGCAA-ATACCTT 408
||| |||.||| |||.|||| || ||||
BPUM_2363___y 369 AAA------------AAAACAAGCCATTCACACCTATAGCAACAT-CCTT 405
BSNT_03961___ 409 CACTTGCATGATAAAATAGTGTTTGCCGATACCGTCTTTGAAGATGCGCA 458
||||...|||.|||||||||.|||||.|||||..|.|||.||.|| ||
BPUM_2363___y 406 CACTCAGATGGTAAAATAGTCTTTGCTGATACAATGTTTCAAAAT---CA 452
BSNT_03961___ 459 ---AGCGTATCAAAAGGCT---ATCGATAAAGC-----CCGTTCTCAAGG 497
|||..||||| ||| ||.||.||||| |.| .|||
BPUM_2363___y 453 ATCAGCACATCAA---GCTGAAATTGACAAAGCGAAAGCGG-----CAGG 494
BSNT_03961___ 498 CTTTTATCAGCTTGCAAATGATTTAGAGACAGAGCATTATCC-TACATTG 546
.|||.||||||||||..|.||||||||.||.||..||||||| |.|| |.
BPUM_2363___y 495 GTTTGATCAGCTTGCTGAAGATTTAGAAACGGAATATTATCCATCCA-TC 543
BSNT_03961___ 547 GATGCGTTGAAAG-AAATGTTTACAGCTGAAGGTTTTGCAGTCCGATTCA 595
||||.|.| |||| ||||.|||..||..||||||||| |||.|| |.|.
BPUM_2363___y 544 GATGTGCT-AAAGCAAATCTTTGAAGAAGAAGGTTTT--AGTACG-TCCT 589
BSNT_03961___ 596 CTCAGCAA---AACGACTTCGTGTGGATAATGGAGGCGATCAAACGGTAA 642
.|||.||| ||.||.||.||.|||||..|.||.||||..|||.||.||
BPUM_2363___y 590 TTCATCAAATGAATGATTTTGTTTGGATCGTAGAAGCGAAGAAAAGGGAA 639
BSNT_03961___ 642 --- 642
BPUM_2363___y 640 TGA 642
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