Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03961 and BPUM_2363

See Amino acid alignment / Visit BSNT_03961 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:26
# Commandline: needle
#    -asequence dna-align/BSNT_03961___yrrT.1.24716.seq
#    -bsequence dna-align/BPUM_2363___yrrT.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03961___yrrT-BPUM_2363___yrrT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03961___yrrT-BPUM_2363___yrrT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03961___yrrT
# 2: BPUM_2363___yrrT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 703
# Identity:     434/703 (61.7%)
# Similarity:   434/703 (61.7%)
# Gaps:         122/703 (17.4%)
# Score: 1218.5
# 
#
#=======================================

BSNT_03961___      1 ATGGGACGTGAATTTATCCCTCTCTTTGAAGATTGGGCAGCAACTTATGA     50
                     |||||||||||.|||.|..||.|.|||||..|||||||.|...|||||||
BPUM_2363___y      1 ATGGGACGTGAGTTTCTTTCTTTATTTGATCATTGGGCTGACTCTTATGA     50

BSNT_03961___     51 CCAAACAGTACAAGGTTTAGATATTCAGTATAAAGAAGCGTTCAGAGGCT    100
                     |.|.||.|||...|||...|||...||||||.||||||..||..|..|.|
BPUM_2363___y     51 CGACACGGTAAGTGGTCATGATGAGCAGTATGAAGAAGTATTTCGCCGGT    100

BSNT_03961___    101 ATGATCATATCCTTGAT-------GCCATCG-TCA----GCAAATCTGGA    138
                     ||       ||..||||       |..||.| |||    |||..||   |
BPUM_2363___y    101 AT-------TCGGTGATTTTAAAAGAAATTGTTCACCGCGCAGGTC---A    140

BSNT_03961___    139 ACGCATGTGTTAGAATTTGGCCCTGGGACAGGGAATTTGACGGCTAAGCT    188
                     |  |||||..|.||||||||....||.||.||||||.|.||.||....||
BPUM_2363___y    141 A--CATGTTCTTGAATTTGGAAGCGGCACGGGGAATCTAACAGCGGCACT    188

BSNT_03961___    189 GCTCGATGCAGGCAA-AACTGTATTTGGAATCGAACCTTCTCCAGCAATG    237
                     |||||..||.|..|| ||| ||||||||..|.|||||.||....||.|||
BPUM_2363___y    189 GCTCGCAGCTGATAAGAAC-GTATTTGGTGTTGAACCATCAGACGCCATG    237

BSNT_03961___    238 CGTAAA----CTGGCTTCTGACAAGCTTTCAGGCAGGTCGGAA------A    277
                     ...|||    ||  ||||  |.|||              ||||      |
BPUM_2363___y    238 AAGAAAGCAGCT--CTTC--AAAAG--------------GGAATACCCGA    269

BSNT_03961___    278 TCGT------TGATGGAGACTTCCTGACATTCCCTGAGCCGCCATTTCAG    321
                     | ||      ||||||.||.||..|..||||.||.|..|||||||||.||
BPUM_2363___y    270 T-GTGTTTCATGATGGCGATTTTTTATCATTTCCAGCACCGCCATTTGAG    318

BSNT_03961___    322 GCTGATACAATTGTCAGTTCATATGCTTTTCATCATTTGACTGACGAAGA    371
                     .|.|||||.||.||||||||||||||.||.||.|||||.||.||||||||
BPUM_2363___y    319 CCGGATACGATCGTCAGTTCATATGCATTCCACCATTTAACGGACGAAGA    368

BSNT_03961___    372 AAAGCGGGCTGCCATAAAGCAA------------TATGGCAA-ATACCTT    408
                     |||            |||.|||            |||.|||| || ||||
BPUM_2363___y    369 AAA------------AAAACAAGCCATTCACACCTATAGCAACAT-CCTT    405

BSNT_03961___    409 CACTTGCATGATAAAATAGTGTTTGCCGATACCGTCTTTGAAGATGCGCA    458
                     ||||...|||.|||||||||.|||||.|||||..|.|||.||.||   ||
BPUM_2363___y    406 CACTCAGATGGTAAAATAGTCTTTGCTGATACAATGTTTCAAAAT---CA    452

BSNT_03961___    459 ---AGCGTATCAAAAGGCT---ATCGATAAAGC-----CCGTTCTCAAGG    497
                        |||..|||||   |||   ||.||.|||||     |.|     .|||
BPUM_2363___y    453 ATCAGCACATCAA---GCTGAAATTGACAAAGCGAAAGCGG-----CAGG    494

BSNT_03961___    498 CTTTTATCAGCTTGCAAATGATTTAGAGACAGAGCATTATCC-TACATTG    546
                     .|||.||||||||||..|.||||||||.||.||..||||||| |.|| |.
BPUM_2363___y    495 GTTTGATCAGCTTGCTGAAGATTTAGAAACGGAATATTATCCATCCA-TC    543

BSNT_03961___    547 GATGCGTTGAAAG-AAATGTTTACAGCTGAAGGTTTTGCAGTCCGATTCA    595
                     ||||.|.| |||| ||||.|||..||..|||||||||  |||.|| |.|.
BPUM_2363___y    544 GATGTGCT-AAAGCAAATCTTTGAAGAAGAAGGTTTT--AGTACG-TCCT    589

BSNT_03961___    596 CTCAGCAA---AACGACTTCGTGTGGATAATGGAGGCGATCAAACGGTAA    642
                     .|||.|||   ||.||.||.||.|||||..|.||.||||..|||.||.||
BPUM_2363___y    590 TTCATCAAATGAATGATTTTGTTTGGATCGTAGAAGCGAAGAAAAGGGAA    639

BSNT_03961___    642 ---    642
                        
BPUM_2363___y    640 TGA    642


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