Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03958 and BPUM_2361
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:26
# Commandline: needle
# -asequence dna-align/BSNT_03958___yrhA.1.24716.seq
# -bsequence dna-align/BPUM_2361___yrhA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03958___yrhA-BPUM_2361___yrhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03958___yrhA-BPUM_2361___yrhA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03958___yrhA
# 2: BPUM_2361___yrhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 961
# Identity: 666/961 (69.3%)
# Similarity: 666/961 (69.3%)
# Gaps: 74/961 ( 7.7%)
# Score: 2209.5
#
#
#=======================================
BSNT_03958___ 1 ATGACAGTGATTACGGACATTACCGAGCTGATTGGGAATACACCGCTTCT 50
|||.|.||.||.|.|||.|||||.||..|.|||||....|||||||||.|
BPUM_2361___y 1 ATGGCTGTCATAAAGGATATTACAGAATTAATTGGCCGCACACCGCTTTT 50
BSNT_03958___ 51 CCGCTTGAAGAACTTTGATG--------TTCCAGAAGGAGTCGCGGTGTA 92
|.||||.|.|.| |.||.|||||.||.|.|||.||
BPUM_2361___y 51 --------AAAACTGTCAGGAATCGGCATCCCGGAAGGTGTAGAGGTATA 92
BSNT_03958___ 93 TGCCAAGCTTGAAATGATGAATCCAGGGGGAAGCATCAAAGACAGACTGG 142
|||.||||||||||||||||||||.||.|||||.||.|||||..|..|.|
BPUM_2361___y 93 TGCGAAGCTTGAAATGATGAATCCGGGTGGAAGTATTAAAGATCGTTTAG 142
BSNT_03958___ 143 GAGATATGCTGATTCGTGACGCGCTCGATTCAGGCA--AGGTAAA----- 185
|.||||||||.||..|.||.|| ||| |||| .||.|||
BPUM_2361___y 143 GTGATATGCTCATAAGAGAAGC-----ATT--GGCATCTGGCAAATTGCG 185
BSNT_03958___ 186 ACCTGGCGGAGTGATTATAGAAGCTACGGCAGGCAATACAGGGATCGGCC 235
.|||||||||...||.||||||||.||.||.||.||.|||||.||.||.|
BPUM_2361___y 186 CCCTGGCGGAACCATCATAGAAGCAACTGCTGGAAACACAGGCATTGGGC 235
BSNT_03958___ 236 TTGCGCTGAGTGCCAGAAAATATGGGCTGAAA--GCG----ATTTTCTGT 279
||||.||.|||||.||||||.|| .|| ||| |||||.||.
BPUM_2361___y 236 TTGCTCTCAGTGCAAGAAAACAT------CAATTGCGTACCATTTTTTGC 279
BSNT_03958___ 280 GTCCCTGAACATTTCAG-CAGAGAGAAACAGCAAATTATGCAAGCGCTTG 328
||.||.||||||||||| || |||.|||||.||..|.|||.|.|||||.|
BPUM_2361___y 280 GTACCAGAACATTTCAGTCA-AGAAAAACAACAGCTCATGAAGGCGCTCG 328
BSNT_03958___ 329 GCGCATCAATCATTCATACACCGCGTCAAGACGGAATGCAGGGCGCCATT 378
|.|||...||||||||||||||..|..||||.||.|||.||||.||.|||
BPUM_2361___y 329 GTGCAAAGATCATTCATACACCAAGAAAAGAGGGCATGAAGGGTGCGATT 378
BSNT_03958___ 379 CAAAAAGCCATTCAGCTGGAGTCTGAAA---TTGAAAATTCTTATTGCGT 425
.|...||||.||.|.||.||| |.|| ||||.|||.|.||||||||
BPUM_2361___y 379 AATCGAGCCCTTGAACTAGAG---GCAAGCCTTGACAATGCCTATTGCGT 425
BSNT_03958___ 426 TTTGCAATTTAAAAACCGAGTAAATCCATCGACTTACTATAAGACGCTTG 475
|||||||||||||||||.|||||||||||.||||||||||||.|||||||
BPUM_2361___y 426 TTTGCAATTTAAAAACCAAGTAAATCCATTGACTTACTATAAAACGCTTG 475
BSNT_03958___ 476 GGCCTGAAATGTGG---GAAGCGCTTG-ATGGGAATATTCATACATTTGT 521
|.||.||..|.||| || |.|| |.||.||.||..||..|||.||
BPUM_2361___y 476 GTCCAGAGTTATGGTCCGA----CCTGCAAGGAAACATCGATGTATTCGT 521
BSNT_03958___ 522 CGCAGGGGCAGGATCAGGGGGCACGTTCGCAGGAACAGCTTCCTTCTTAA 571
.|||||.||.|||||.|||||.||.||...|||....||..|||..||||
BPUM_2361___y 522 GGCAGGAGCGGGATCTGGGGGAACTTTTCAAGGGTGTGCCGCCTATTTAA 571
BSNT_03958___ 572 AAGAAAAAAATCCAGCAGTCAAAACGGTGATTGTTGAACCGGAGGGCTCG 621
||||..|..||||.||..|.|||||.||..||||.|||||.||.||.|||
BPUM_2361___y 572 AAGAGCAGCATCCGGCGCTAAAAACAGTTGTTGTCGAACCTGAAGGATCG 621
BSNT_03958___ 622 ATTTTAAACGGAGGAGAGCC---TCACGCTCATAAAACAGAGGGCATCGG 668
||||||||.||||||||.|| || |.||||||||.||.||.|||||
BPUM_2361___y 622 ATTTTAAATGGAGGAGATCCAGGTC---CGCATAAAACGGAAGGAATCGG 668
BSNT_03958___ 669 AATGGAGTTTATCCCCGATTATAT-GAATAAGAGCCACTTT----GATAA 713
..|.||.||||||||.|||||||| |||| |..|||| |||.|
BPUM_2361___y 669 CCTTGAATTTATCCCAGATTATATGGAAT-----CTGCTTTATTCGATGA 713
BSNT_03958___ 714 GATCTACACCGTAACGGATGAGAATGCGTTTAGACTTGTGAAAGAAGCGG 763
|||.||.|||||.|..|||.|..||||.||..|..|.|||||||||||.|
BPUM_2361___y 714 GATATATACCGTCAGTGATCATGATGCTTTCCGCATGGTGAAAGAAGCTG 763
BSNT_03958___ 764 CAGAAAAAGAAGGCCTGCTGATCGGAAGCTCTTCAGGTGCAGCGCTTTAT 813
|.||||||||||||.|.||.|||||.||.|||||.|||||||||.|.|.|
BPUM_2361___y 764 CTGAAAAAGAAGGCGTTCTCATCGGGAGTTCTTCGGGTGCAGCGTTATTT 813
BSNT_03958___ 814 GCAGCATTGGAGGAAGCGAAAAAAGCATCGGCGGGAACTAACATTGTCAC 863
||.||.||.||.|||||||..||.|||.|..|.||.||...|||.|||||
BPUM_2361___y 814 GCCGCTTTAGAAGAAGCGAGGAAGGCAGCACCTGGGACCGTCATCGTCAC 863
BSNT_03958___ 864 AGTATTTCCTGACAGCAGCGATCGATATATCAGCAAACAAATATACGAAG 913
..|.||||||||||||||.||.||.|||.|.||.|||...||.||.||.|
BPUM_2361___y 864 CATTTTTCCTGACAGCAGTGAACGGTATTTAAGTAAAGGCATTTATGAGG 913
BSNT_03958___ 914 GAGGCATCTGA 924
||||.|..|.|
BPUM_2361___y 914 GAGGAAAATAA 924
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