Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03940 and BPUM_2356
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:25
# Commandline: needle
# -asequence dna-align/BSNT_03940___yrhH.1.24716.seq
# -bsequence dna-align/BPUM_2356___yrhH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03940___yrhH-BPUM_2356___yrhH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03940___yrhH-BPUM_2356___yrhH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03940___yrhH
# 2: BPUM_2356___yrhH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 701
# Identity: 342/701 (48.8%)
# Similarity: 342/701 (48.8%)
# Gaps: 256/701 (36.5%)
# Score: 748.0
#
#
#=======================================
BSNT_03940___ 1 ATGCTAGAAAATAGACTCTATAAACGATCGGATTTTTGGAAATTATTTTC 50
|.||.|| ||.|.| ||| |||||||
BPUM_2356___y 1 -----------TTGATTC----AAAGCT-GGA---TTGGAAA-------- 23
BSNT_03940___ 51 TCGGAAATATAAGCTAACCAAAA----------CAA------TTGAGC-- 82
|.|.||.||..|||||||| ||| |||..|
BPUM_2356___y 24 ----ACAAATGAGGGAACCAAAAGGCTTGTTCTCAAAATGGGTTGCCCGC 69
BSNT_03940___ 83 -ATATG----------------------ATGATTG---------ACTCTA 100
||||| ||||.|| |||||
BPUM_2356___y 70 TATATGGAAAAAAATCATCATAATATCAATGAATGGACGATTCAACTCT- 118
BSNT_03940___ 101 TAGATATACAAGAAAATGACAGAATTTTAGAAATTGGAATTGGAAACGGC 150
||.|||||||||||||||||.|.|||||||||||.||.|.|||||..|||
BPUM_2356___y 119 TAAATATACAAGAAAATGACCGGATTTTAGAAATCGGTACTGGAAGAGGC 168
BSNT_03940___ 151 ACTGTCTTT---AAAAGCATAACCAAGAAACTAAA-------AAAG---- 186
| ||.|.|| ||||| ||.|..|||||||..| ||||
BPUM_2356___y 169 A-TGACATTATCAAAAG--TAGCAGAGAAACTTGATCGTGGTAAAGTATA 215
BSNT_03940___ 187 ------GGAAGCCT------AAAAAGCATTGATC----CTTCAAAACGAA 220
.||.|||| |.| ||||| .|.|||||.|||
BPUM_2356___y 216 TGGAGTCGATGCCTCTCGTCATA------TGATCAAATATGCAAAAAGAA 259
BSNT_03940___ 221 AGGTAAGACAGATATCACGTGCGAATCGAAAGAACATGGGGAACGGGGAG 270
| |||.|.|...|.|| .|||||| ||..||.|..|..
BPUM_2356___y 260 A------ACATAAAAAGCTTG--------TAGAACA-GGATAAAGCCGTC 294
BSNT_03940___ 271 GTTTTTCATGGCTATCCAGAGGACATT--CCCTTTGATGACCGTACCTTT 318
||...||.|||..|..|.||| |||| ||.|||||.|||.|..|.||.
BPUM_2356___y 295 GTGACTCTTGGTAAAGCTGAG--CATTTACCTTTTGAAGACAGATCATTC 342
BSNT_03940___ 319 AATAAAGTCTTTTCTTTACATACGGTTCAAAGCTGCACCA-ATATTAGGC 367
|||||| |||..||||||.|| .|||| .||||| |
BPUM_2356___y 343 AATAAA---------TTATTTACGGTGCA------GACCATTTATTA--C 375
BSNT_03940___ 368 TTG-----------------CATTAAGAGAAATTTACAGGGTGCTTCAAA 400
||| |||.||| |||.|.|||.|.||.||||||.
BPUM_2356___y 376 TTGAAGGATATTGAGCAAGTCATGAAG-GAAGTGTACCGCGTTCTTCAAG 424
BSNT_03940___ 401 TTGACGGCCGGTTTTATATCAGTATTGACACAAAT--------------- 435
|.||.|| |..||||| ||..||
BPUM_2356___y 425 TGGATGG----------AGAAGTAT----ACTTATCTTTCCAACAGCAGG 460
BSNT_03940___ 436 -ACCGGTGAA-----AAAA------AGAA--------AACGTATATTCAA 465
||.|.|||| |||| |.|| |.||||||.|.||
BPUM_2356___y 461 AACTGATGAAGGAACAAAAGCGGTCACAATCTTTTTCATCGTATAGTGAA 510
BSNT_03940___ 466 CTGCTGAA-AGACCAGC------ATTTCAG-GGATC------------TT 495
| || |||..||| .|||||| |.||| ||
BPUM_2356___y 511 C-----AAGAGATTAGCCGCCTATTTTCAGCGTATCACTTTAGAGAAGTT 555
BSNT_03940___ 496 TCTG-TTATCAGGC-GTGATTCCTGTCTATGTATTATGGCTGTT-AAATA 542
||.| |||||| | .||||.|.|...|.|||||.|..|| ||| ||||.
BPUM_2356___y 556 TCGGTTTATCA--CTATGATACATACATCTGTATCAAAGC-GTTAAAATG 602
BSNT_03940___ 543 A 543
|
BPUM_2356___y 603 A 603
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