Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03940 and BPUM_2356

See Amino acid alignment / Visit BSNT_03940 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:25
# Commandline: needle
#    -asequence dna-align/BSNT_03940___yrhH.1.24716.seq
#    -bsequence dna-align/BPUM_2356___yrhH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03940___yrhH-BPUM_2356___yrhH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03940___yrhH-BPUM_2356___yrhH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03940___yrhH
# 2: BPUM_2356___yrhH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 701
# Identity:     342/701 (48.8%)
# Similarity:   342/701 (48.8%)
# Gaps:         256/701 (36.5%)
# Score: 748.0
# 
#
#=======================================

BSNT_03940___      1 ATGCTAGAAAATAGACTCTATAAACGATCGGATTTTTGGAAATTATTTTC     50
                                |.||.||    ||.|.| |||   |||||||        
BPUM_2356___y      1 -----------TTGATTC----AAAGCT-GGA---TTGGAAA--------     23

BSNT_03940___     51 TCGGAAATATAAGCTAACCAAAA----------CAA------TTGAGC--     82
                         |.|.||.||..||||||||          |||      |||..|  
BPUM_2356___y     24 ----ACAAATGAGGGAACCAAAAGGCTTGTTCTCAAAATGGGTTGCCCGC     69

BSNT_03940___     83 -ATATG----------------------ATGATTG---------ACTCTA    100
                      |||||                      ||||.||         ||||| 
BPUM_2356___y     70 TATATGGAAAAAAATCATCATAATATCAATGAATGGACGATTCAACTCT-    118

BSNT_03940___    101 TAGATATACAAGAAAATGACAGAATTTTAGAAATTGGAATTGGAAACGGC    150
                     ||.|||||||||||||||||.|.|||||||||||.||.|.|||||..|||
BPUM_2356___y    119 TAAATATACAAGAAAATGACCGGATTTTAGAAATCGGTACTGGAAGAGGC    168

BSNT_03940___    151 ACTGTCTTT---AAAAGCATAACCAAGAAACTAAA-------AAAG----    186
                     | ||.|.||   |||||  ||.|..|||||||..|       ||||    
BPUM_2356___y    169 A-TGACATTATCAAAAG--TAGCAGAGAAACTTGATCGTGGTAAAGTATA    215

BSNT_03940___    187 ------GGAAGCCT------AAAAAGCATTGATC----CTTCAAAACGAA    220
                           .||.||||      |.|      |||||    .|.|||||.|||
BPUM_2356___y    216 TGGAGTCGATGCCTCTCGTCATA------TGATCAAATATGCAAAAAGAA    259

BSNT_03940___    221 AGGTAAGACAGATATCACGTGCGAATCGAAAGAACATGGGGAACGGGGAG    270
                     |      |||.|.|...|.||        .|||||| ||..||.|..|..
BPUM_2356___y    260 A------ACATAAAAAGCTTG--------TAGAACA-GGATAAAGCCGTC    294

BSNT_03940___    271 GTTTTTCATGGCTATCCAGAGGACATT--CCCTTTGATGACCGTACCTTT    318
                     ||...||.|||..|..|.|||  ||||  ||.|||||.|||.|..|.||.
BPUM_2356___y    295 GTGACTCTTGGTAAAGCTGAG--CATTTACCTTTTGAAGACAGATCATTC    342

BSNT_03940___    319 AATAAAGTCTTTTCTTTACATACGGTTCAAAGCTGCACCA-ATATTAGGC    367
                     ||||||         |||..||||||.||      .|||| .|||||  |
BPUM_2356___y    343 AATAAA---------TTATTTACGGTGCA------GACCATTTATTA--C    375

BSNT_03940___    368 TTG-----------------CATTAAGAGAAATTTACAGGGTGCTTCAAA    400
                     |||                 |||.||| |||.|.|||.|.||.||||||.
BPUM_2356___y    376 TTGAAGGATATTGAGCAAGTCATGAAG-GAAGTGTACCGCGTTCTTCAAG    424

BSNT_03940___    401 TTGACGGCCGGTTTTATATCAGTATTGACACAAAT---------------    435
                     |.||.||          |..|||||    ||..||               
BPUM_2356___y    425 TGGATGG----------AGAAGTAT----ACTTATCTTTCCAACAGCAGG    460

BSNT_03940___    436 -ACCGGTGAA-----AAAA------AGAA--------AACGTATATTCAA    465
                      ||.|.||||     ||||      |.||        |.||||||.|.||
BPUM_2356___y    461 AACTGATGAAGGAACAAAAGCGGTCACAATCTTTTTCATCGTATAGTGAA    510

BSNT_03940___    466 CTGCTGAA-AGACCAGC------ATTTCAG-GGATC------------TT    495
                     |     || |||..|||      .|||||| |.|||            ||
BPUM_2356___y    511 C-----AAGAGATTAGCCGCCTATTTTCAGCGTATCACTTTAGAGAAGTT    555

BSNT_03940___    496 TCTG-TTATCAGGC-GTGATTCCTGTCTATGTATTATGGCTGTT-AAATA    542
                     ||.| ||||||  | .||||.|.|...|.|||||.|..|| ||| ||||.
BPUM_2356___y    556 TCGGTTTATCA--CTATGATACATACATCTGTATCAAAGC-GTTAAAATG    602

BSNT_03940___    543 A    543
                     |
BPUM_2356___y    603 A    603


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