Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01394 and BPUM_2348
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:59
# Commandline: needle
# -asequence dna-align/BSNT_01394___yfiS.1.24716.seq
# -bsequence dna-align/BPUM_2348.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01394___yfiS-BPUM_2348.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01394___yfiS-BPUM_2348.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01394___yfiS
# 2: BPUM_2348
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1579
# Identity: 681/1579 (43.1%)
# Similarity: 681/1579 (43.1%)
# Gaps: 683/1579 (43.3%)
# Score: 1127.5
#
#
#=======================================
BSNT_01394___ 1 ATGGAAAAACCGTTGTTTCGCAATCAAAAAGGACTGATGACACTGTT--- 47
|||.||||||..|.| ||..|| |||| |||
BPUM_2348 1 ATGAAAAAACATTGG---CGGGAT------------ATGA----GTTTGC 31
BSNT_01394___ 48 -------AGCC-TCGCAA-----ACCATTTCTTCACTTGGAGACTGGCTT 84
|||| |||.|| |.|| |.|||||.|||.||
BPUM_2348 32 TGCTTGGAGCCATCGGAATTGCGAACA---------TAGGAGAATGGATT 72
BSNT_01394___ 85 CACATTTTGGCCGTGCTAACATTAGCCGCTTTTCAGCTTCATGCTTCTCC 134
.|.||..|.|| |||.||| ||.|||
BPUM_2348 73 TATATGATTGC------------------------GCTCCAT-CTACTC- 96
BSNT_01394___ 135 ATTAGATATGTCGCTTTTAATGA---------TGTCGTTTGCTTT---GC 172
|| ||||.|.|| ||| |.|||||.| |.
BPUM_2348 97 -------AT-----TTTTCAAGAAACGGGCTCTGT-GCTTGCTGTAACGG 133
BSNT_01394___ 173 CTGTC-AT-TGTACTCGGACCTGTATCGGGTCTGCTTGCCGACCGTTTTG 220
||||| || ||| |..||||.|| ||||| |..||||.
BPUM_2348 134 CTGTCTATATGT--TGAGACCAGT--------TGCTT-----CTCTTTTA 168
BSNT_01394___ 221 ACAGAAAAAC-GATCAT----GTTT------CTGTCTGAA--ATCGG-AC 256
||| ||.|.| |.|| | |||| |.|.||||| |.||| |.
BPUM_2348 169 ACA-AACAGCTGGTC-TGGCAGTTTGATTGACAGGCTGAATCAGCGGAAA 216
BSNT_01394___ 257 GTGCCCTCACCGTTATCAGCTGCGTTTATGTCAGT-----GAGCTT--TG 299
||| .|.||||||| |..||.||||| .|.||| |.
BPUM_2348 217 GTG--------ATGATCAGCT---TAGATATCAGTCGGGCAATCTTGATC 255
BSNT_01394___ 300 GCAGCTTTACGTA----TTGCTATGCCTTCAGAGCTGTTTTTCTTCACTT 345
|| ||.|| || ||||.||...|||||.| |.|||.|
BPUM_2348 256 GC--CTGTA--TACCCTTTGCGATATTTTCAGGG-----TATCTGC---- 292
BSNT_01394___ 346 TTTTCACCTGCTA--AAAACGGAAAGCTTAAGGAATTGGCTCCGGAAGCA 393
|.||||..|| .||.||.....||||...||.||||.| ||||
BPUM_2348 293 ---TTACCTTGTATGTAATCGTCTTTCTTATTCAAATGGCAC---AAGC- 335
BSNT_01394___ 394 CACATTCAGCAGGCTGTTTCCGCCAGCAGCATCATTGATAACAGTGCAAA 443
|.||||||..||.|
BPUM_2348 336 ------------GATGTTTCATCCGG------------------------ 349
BSNT_01394___ 444 AATCTTCGGCCCTGCCCT---TGGCGGCATGCTGATCGCTGCTGTCTCTA 490
||||| .||..|| ||.|||.|| ||||..|.||.| |
BPUM_2348 350 ---CTTCG---ATGGTCTATATGACGGGAT--TGATTCCGGCGG-----A 386
BSNT_01394___ 491 TA-------------------CATTCTGTTTTCTATATTA-ACGCCGGCG 520
|| ||||| .|||..||||| |..|.||.|
BPUM_2348 387 TAATCGAAAAAGATTTAATGCCATTC---GTTCATTATTACAATCGGGTG 433
BSNT_01394___ 521 CCTTT---CTTCTTTCCGCTGT--CA-------TTTTGTTTTTC----CT 554
..||| |||..|.||||||| || ||||.||..|| ||
BPUM_2348 434 GGTTTTTACTTGGTCCCGCTGTAGCAGGTCTGCTTTTTTTAATCGGAACT 483
BSNT_01394___ 555 CCCCAAAGATGCTTTTTTACAAAAAGCCAATACACCTCAAGAAAAAACAT 604
|| ||.||||| ||||..|..||||
BPUM_2348 484 CC-------TGTTTTTT----------CAATTTATATCAA---------- 506
BSNT_01394___ 605 CAGCACT---------------TGCTTCTATTAAAGAAG-GCCTTCAGTA 638
.|||.| ||| |||.||.|.||.| |..|.|.|.|
BPUM_2348 507 -TGCAATTTGTCTATTGGTATCTGC-TCTGTTCACGATGTGTTTACCGAA 554
BSNT_01394___ 639 TTTG---AAAC-GGATGCCA----------CTT----CTTTTAAT----- 665
|||| |||| .|||||.| ||| ||||.|||
BPUM_2348 555 TTTGCTCAAACAAGATGCTAACCAAAAGGGCTTTACCCTTTCAATGTTAA 604
BSNT_01394___ 666 ---AGGCTTACTCACAGCTTGCGTCGTTCTC---TTTGTTTTG------- 702
||| |..|..||||| |||||| |||..||||
BPUM_2348 605 AAGAGG---ATGCGAAGCTT-----GTTCTCCGGTTTAGTTTGACATCAC 646
BSNT_01394___ 703 --CAGATT-----GGTG--------ATTCCCAG----GCTATCA------ 727
|||||| |||| ||| .|| |||||||
BPUM_2348 647 GCCAGATTATGACGGTGTATTTGTTATT--TAGTGCTGCTATCACGGTAC 694
BSNT_01394___ 728 TTCTTA-TCCG-----TTCT------------TTTTC-----AGGCGCTC 754
|||.|| |.|| |||| |||.| |.|.||||
BPUM_2348 695 TTCCTACTGCGATTGATTCTCTTGAAACAGCCTTTGCAAAAGAAGTGCTC 744
BSNT_01394___ 755 CGCCTGAGCTTGCAGGCTGGTGC-----ATGGCCGTC----------AGC 789
| |||.|.|||.|.| ||||.|.|| |||
BPUM_2348 745 C---------TGCTGACTGATACACAATATGGTCTTCTTGTTAGTATAGC 785
BSNT_01394___ 790 -GGAGCCGGCATGCTC------------CTTACGGCGGCAATTGCCG--- 823
||.||.||.||..|| ||||...|||..||||..|
BPUM_2348 786 TGGGGCAGGTATTATCGCAGGCGCAGGTCTTAATTCGGTGATTGTGGAAA 835
BSNT_01394___ 824 -GCAGACGG---CGAATCA-CCTC-------TTATTTTCTTT-------- 853
||.|||.| || |||| .||| .||.|||.|||
BPUM_2348 836 AGCTGACTGTTTCG-ATCATGCTCGGGGTTGGTAGTTTGTTTGTGGCATG 884
BSNT_01394___ 854 ---ATTTCTCAGCTGGGACCTTTCTGCTTGGACTAGCAACTGGAGGCGTG 900
.|.||||| |||.|||||...|.||||
BPUM_2348 885 TGGCTATCTCA---------TTTATGCTTTTTCCAGCA------------ 913
BSNT_01394___ 901 CCATT-TCTGAGCGGAATGGGAATTGCCGGCATTGCTCTTTTTATTTTCG 949
|||| |.||.| ||||...|||...|||||||.||.|
BPUM_2348 914 -CATTGTTTGCG-------------GCCGCTGTTGGATTTTTTATATTAG 949
BSNT_01394___ 950 C--TTTTTTCATCATGGGAGCGGCTTTT---------GGTCTGGTCCATA 988
| |.||||.| |||||| |||.| ||
BPUM_2348 950 CATTCTTTTTA-----------GCTTTTGCGAACACAGGTTT------TA 982
BSNT_01394___ 989 TTCCATTTCAAATTCTCGTGCAAAC-AACAGTGCCGGTTGATTACAGCGG 1037
|..| ||||.| .||||| ||.| |.|||||.||
BPUM_2348 983 TGAC-TTTCTA--------TCAAACGAATA-TCCCGGTAGA--------- 1013
BSNT_01394___ 1038 CAGGGTGTTTGGCGCCATTCAGAGCGCGACAACCCT-----CGCCTCCAT 1082
|||| .|||.||.|.| ||||.| | |||.|
BPUM_2348 1014 ---GGTG-ATGGGGCGAGT---AGCGAG-------TTTTTACGCTT---- 1045
BSNT_01394___ 1083 CCTCGGCATGGCGGGCGGAGGCATGCTGGCG--------GAATGGAT--- 1121
|||.| |.||.|||.|||.|| ||..||||
BPUM_2348 1046 --------TGGTG---GAAGCCATTCTGACGATCATGATGACAGGATTCT 1084
BSNT_01394___ 1122 -CGGTG---TTTCACTTGCTTT-----------------------TC--T 1142
.|||| ||.|||.||.||| || |
BPUM_2348 1085 CTGGTGGACTTGCACATGTTTTATCAATCAGAACCTCCGTTGTCATCGGT 1134
BSNT_01394___ 1143 TGTCTGTGGCTGCTTGCTGATCTTGATTGGGTTGATTACACTTGTAGGTA 1192
.||||.||..|||| ||||| |..|||.|||
BPUM_2348 1135 AGTCTATGTATGCT------TCTTG--TCTGTTTATT------------- 1163
BSNT_01394___ 1193 AGAAAGTTTCAGAAAGCAGGCGATATCTTGTCACCAAAAGTAACAAAGGA 1242
||.||.|.||||||.|....|| |.|..||
BPUM_2348 1164 -------------------GCTATGTTTTGTCATCTTTCGT--CCATTGA 1192
BSNT_01394___ 1243 ---GCACAAGGATAA-------------- 1254
|||.||.||||.
BPUM_2348 1193 CTGGCAAAAAGATAGTGCATCCTACTTAG 1221
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