Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01385 and BPUM_2342
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:58
# Commandline: needle
# -asequence dna-align/BSNT_01385___yfiL.1.24716.seq
# -bsequence dna-align/BPUM_2342.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01385___yfiL-BPUM_2342.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01385___yfiL-BPUM_2342.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01385___yfiL
# 2: BPUM_2342
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1144
# Identity: 454/1144 (39.7%)
# Similarity: 454/1144 (39.7%)
# Gaps: 563/1144 (49.2%)
# Score: 782.0
#
#
#=======================================
BSNT_01385___ 1 -------------GTGCTGC-----------AAGC-AGAAAACATCAAAA 25
|||.||| .||| |..||.|..||.||
BPUM_2342 1 ATGTCAAAGGAACGTGATGCTTTTATGATTTCAGCTACTAATCTACATAA 50
BSNT_01385___ 26 AGGCATATGGAAAAAAAACAATCGTG---AAAGGTATTTCTTTTTCCCTC 72
| .|.||||| ..|.|.|.|| ||| |||||.|||..|||..||.|.
BPUM_2342 51 A-TCTTATGG--GCAGACCCAT-GTGTTAAAAGGCATTGATTTCACCGTA 96
BSNT_01385___ 73 CAA-AAGGGGGAGTCGTTCGGTCTGC-----TCGGGCCAAACGGTGCCGG 116
||| ||||.|.|||.|| ||| |.||.||.|.|||..|.||
BPUM_2342 97 CAAGAAGGTGAAGTGGT------TGCCATTATTGGACCGAGCGGATCAGG 140
BSNT_01385___ 117 GAAGTCCAC----------------AACCATCTCGATGATTTCCGGCC-- 148
.||..|||| |||...|||||| .||||.|.|
BPUM_2342 141 AAAAACCACACTTCTTCGCAGCTTAAACAGCCTCGAT--ATTCCAGACAA 188
BSNT_01385___ 149 --TTGTGCCGCATGACAG--CGGGAA--CA----TCACGGTGGGCGGCTA 188
..|.|| |||||| .|.||| || |||...||..|| |
BPUM_2342 189 AGGAGAGC----TGACAGTTGGTGAAGCCACGATTCAATTTGAACG---A 231
BSNT_01385___ 189 TGTCATCGGAAAA----------GAAAC---GGCCAAAGCGAAACAAAAA 225
|.|||| |||| ||||| ||| ||| |
BPUM_2342 232 TATCAT---AAAAAAGATCTGCTGAAACTCAGGC---AGC---------A 266
BSNT_01385___ 226 ATC-GGCAT--TGTTCCGCAGGAAATTGCATTATATCCGACACTGACGGC 272
||| ..||| ||||.| .||||||| ||||
BPUM_2342 267 ATCTTCCATGGTGTTTC---------AGCATTAT------CACT------ 295
BSNT_01385___ 273 TCATG----AGAAT---------CTTATGTTTTGGGGGAAAATGT----- 304
|| ||||| ||| ||||||.|
BPUM_2342 296 ---TGTTTCAGAATAAACGAGCACTT-----------GAAAATATTACAG 331
BSNT_01385___ 305 ACGGACTTA-CGCACGGTG---------AGGCCAAAAAAAGATCGGCAGA 344
|.|||.|.| | ||| |.|.|.|||||||| .|||
BPUM_2342 332 AAGGATTGATC-----GTGTCTCAAAACATGTCTAAAAAAGA--AGCA-- 372
BSNT_01385___ 345 GGTCCTTGAATATGTCGG---------TCTGACTGAGCGG--------GC 377
|||.|.||||| |.|.|| |||| ||
BPUM_2342 373 -------GAAAAGGTCGGAGAGCAATTTTTAAC---GCGGATTGGACTGC 412
BSNT_01385___ 378 T-------AAAGA------TAAGATTGAAACGTTCTCCGGGGGGATGAAA 414
| ||||| |..||.|||| ||.||.||.||
BPUM_2342 413 TTCATAAAAAAGATGCGTTTCCGAGTGAA---TTATCTGGCGG------- 452
BSNT_01385___ 415 CGAAGAATCAACATCGGTGCGGCTTTAAT--GCATAAGCCCGAGC---TG 459
|||.||.|.|.| ||| |||| ||||||.|| ||
BPUM_2342 453 -------TCAGCAGCAGCG-------AATTGGCAT-AGCCCGCGCACTTG 487
BSNT_01385___ 460 CTGATTA------------------TGGATGAACCGACTGTCGG-TATTG 490
| |||.| |.||||||||.|| ||||| |.|.|
BPUM_2342 488 C-GATGAACCCTTCAGTTCTCTTGTTTGATGAACCTAC-GTCGGCTCTGG 535
BSNT_01385___ 491 ACCCTCA-AT----CGAGAAATCACATTTTAGAAACGGTCAAA------- 528
||||..| || .||||| |||.|.||||.|.|||||
BPUM_2342 536 ACCCAGAGATGGTAGGAGAA-----ATTCTTGAAATGATCAAAGATATTG 580
BSNT_01385___ 529 -AAGCTCAACGAAACGGGCATGACGGTGATCTATACGAGTCATT-----A 572
.||| ||| ||.|||||..|| |||||| .
BPUM_2342 581 CGAGC-CAA-------GGGATGACAATG----------GTCATTGTGACG 612
BSNT_01385___ 573 CATGGAAGAGGTTGAGTTT-TTATGCGACAGGATCG----GGATA-ATTG 616
||||.|| ||| ||.||| |.|||| || ||||| ..||
BPUM_2342 613 CATGAAA---------TTTCTTTTGC-AAAGGA-CGTGGCGGATACGGTG 651
BSNT_01385___ 617 ATC----------AGGGGGAAATGATTGCGATTGGCACAAAAA------- 649
||| |.||.|||||..||| |||||
BPUM_2342 652 ATCTTTATGGCAGATGGCGAAATCGTTG----------AAAAAGGTTCAC 691
BSNT_01385___ 650 CTGATTTGTGCAGCCG-CCT-TGGGGGCGATACCATCATTCAGCTCACGG 697
|.|| ||.|| ||| |.|..||.|.|.|||.| |||.
BPUM_2342 692 CAGA-------AGACGTCCTATTGAAGCCACAGCATGA--------ACGA 726
BSNT_01385___ 698 TCAGCGGAATCGATGAAGCGTTTCTTTTGGCGATC---CGTTC--CCTGG 742
.| |||.|.|| |||| ||| ..||| |..||
BPUM_2342 727 AC----GAAACAAT----------TTTT----ATCAAGAATTCATCGCGG 758
BSNT_01385___ 743 CTCATGTGAATGATGTAACAGTCCAGGAGTCAGAACTCAAAATTGACATT 792
|||||| |.||.|.|| ||||..||| |||| |||
BPUM_2342 759 --CATGTG------GCAAGAATC--GGAGAAAGA---CAAA--TGA---- 789
BSNT_01385___ 793 TCTGCGGCTCATCATGAGAAAGTCGTCACGAGTCTGCTTGCTGAAGCCGC 842
BPUM_2342 789 -------------------------------------------------- 789
BSNT_01385___ 843 TGCTCATCATATAAACCTGCTGTCTCTTCAGGTGCAGGAACCGAATCTGG 892
BPUM_2342 789 -------------------------------------------------- 789
BSNT_01385___ 893 AGCGCCTGTTTCTGAATCTGACAGGCCGCACGTTGCGGGATTAG 936
BPUM_2342 789 -------------------------------------------- 789
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