Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00777 and BPUM_2341

See Amino acid alignment / Visit BSNT_00777 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:33
# Commandline: needle
#    -asequence dna-align/BSNT_00777___ydbM.1.24716.seq
#    -bsequence dna-align/BPUM_2341___ydbM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00777___ydbM-BPUM_2341___ydbM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00777___ydbM-BPUM_2341___ydbM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00777___ydbM
# 2: BPUM_2341___ydbM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1353
# Identity:     721/1353 (53.3%)
# Similarity:   721/1353 (53.3%)
# Gaps:         396/1353 (29.3%)
# Score: 1736.0
# 
#
#=======================================

BSNT_00777___      1 ATGT------CATTATTT----ATAC----------AAAAC-------GA     23
                     .|||      ||||||||    ||||          |||||       .|
BPUM_2341___y      1 TTGTCTAAAGCATTATTTGTCGATACCGATTTTCAAAAAACATGGCTTCA     50

BSNT_00777___     24 TCAACAGCGGCAATGGA------TGGAGAAA--ATCGGACGGATTGCGGA     65
                     |||||        |.||      |.|.||||  ||||             
BPUM_2341___y     51 TCAAC--------TAGAATCTCTTCGTGAAACGATCG-------------     79

BSNT_00777___     66 TGAATTTCAGCAAACTGCTGCTGAAGATGACGAACAGGGACG----TTTT    111
                             |.|||||.||....|||.||||.|||    |.||    ||||
BPUM_2341___y     80 --------AACAAACGGCAAAAGAACATGATGAA----GGCGCTTATTTT    117

BSNT_00777___    112 CCTGCAGAGAAAATACAAAAACTGCGTGAT-------GCTGGG-TATACA    153
                     |||     |||||   |||.|.||..|.||       |.|||| ||||| 
BPUM_2341___y    118 CCT-----GAAAA---AAATATTGAATCATTAATAGAGATGGGCTATAC-    158

BSNT_00777___    154 GCATTAACATTGCCGGCATC-TCATG------GCGGAGGGGGCATT---T    193
                          |||.|||.|    || ||.||      .||||||.|||..|   |
BPUM_2341___y    159 -----AACGTTGTC----TCTTCCTGCTGAACACGGAGGCGGCGGTCAAT    199

BSNT_00777___    194 CTGTTTACGATATGCTCCTGTTTCAAGAG-----CGGCTTGCACGGGGAG    238
                     ||||..|.||||||.|.||||||||||||     ||||          ||
BPUM_2341___y    200 CTGTGAAGGATATGGTTCTGTTTCAAGAGACACTCGGC----------AG    239

BSNT_00777___    239 -ATGCTCCGACGG-----CT--CTTAGC-ATCGGCTGGCA---------T    270
                      |||    |||||     ||  ||||.| |||||||||||         |
BPUM_2341___y    240 TATG----GACGGAGCAACTACCTTATCAATCGGCTGGCACCAAGGGGTT    285

BSNT_00777___    271 TTGAGCGTGATCGGGGAGCTTGGAGAAGGCAACAGCTGGGATGAAGACGT    320
                     .|..|||.||||...||        ||.|.|||| .|||.||| ||..|.
BPUM_2341___y    286 GTAGGCGAGATCTACGA--------AAAGAAACA-ATGGAATG-AGCAGC    325

BSNT_00777___    321 ATTTGC-ATTTGTTGCCAAGGAAGTCCAAAACGGAGCCGTCATTAACAGG    369
                     |..||| |||..||||..|.|||||..|.||.||.|||.||.|.|||.|.
BPUM_2341___y    326 AGCTGCAATTCTTTGCGGAAGAAGTGAAGAAGGGCGCCCTCGTCAACCGT    375

BSNT_00777___    370 GCGGCGACTGAAGCGAAAACCGGAAGCCCGACAAGAGGAGGGCGTCCCGG    419
                     ||.|..|..||.|||.|.||.||.||.||.||||||||.|||...||.||
BPUM_2341___y    376 GCCGTAAGCGAGGCGCAGACAGGCAGTCCAACAAGAGGCGGGAAGCCTGG    425

BSNT_00777___    420 TACACACGCCGTCAAAAAG------GATGGCA---AATGGGCAGTG----    456
                     .||           ||.||      |||  ||   ||||   ||||    
BPUM_2341___y    426 GAC-----------AACAGCTACTAGAT--CAGGTAATG---AGTGGATT    459

BSNT_00777___    457 ---AACGGGAGAAAAACCTTTACGACGATGTCACAGGCTCTGGATTATTT    503
                        ||.||..|.||||..||.||.||||||||||..||.||....||.||
BPUM_2341___y    460 ATCAATGGACGTAAAATTTTCACAACGATGTCACCAGCGCTTACATACTT    509

BSNT_00777___    504 TTTAGTAACCGCATGGATTGAGGACAAACAAACAACAGGCGTGTTTCTCA    553
                     ||||||....|.|||||||||.||.|||.|..|.|..|||.|.||..|.|
BPUM_2341___y    510 TTTAGTCGGTGTATGGATTGAAGAAAAAGAGGCTATGGGCTTCTTCTTAA    559

BSNT_00777___    554 TTCAT------AAAGATGATCCCGGCTTGTCGATTGAAGAAACGTGGGAT    597
                     |||||      |.||      |.||..|.||.||.||||||||||||.| 
BPUM_2341___y    560 TTCATCGTGAGACAG------CAGGTGTTTCAATAGAAGAAACGTGGAA-    602

BSNT_00777___    598 ATGATGGCGATGCGGGCGTCTGGGAGCCATGACCTTGTACTGAACGAAGT    647
                            ||.||.||||  .||.|||          |.|||||   ||||
BPUM_2341___y    603 -------CGTTGTGGGC--ATGAGAG----------GAACTGA---AAGT    630

BSNT_00777___    648 CATGCTT--------GAT---------------GAGAATAAGCTGGTGGA    674
                     ||||.||        |||               ||..|||.|||.||.||
BPUM_2341___y    631 CATGATTTAATTTTAGATCAGGTGAAGGTTTCAGATGATATGCTTGTTGA    680

BSNT_00777___    675 ACTGCTTCAAGGGCCTCGCGGAGCTAAGCCGAATGGCTGGCTGCTTCACA    724
                     ..|||...|||||||.|||||.|.||.||..|||...|||.|  |.||||
BPUM_2341___y    681 GGTGCAAAAAGGGCCACGCGGTGGTACGCTAAATCCTTGGAT--TGCACA    728

BSNT_00777___    725 T------TCCGGCGATTTATCTTGGTGTGGCTCAAGCTGCTCGTGACTAT    768
                     |      |||.||.|||||    ||..|.||.|||||.||..|.||.|||
BPUM_2341___y    729 TATTCCGTCCTGCTATTTA----GGGATTGCACAAGCAGCAAGGGATTAT    774

BSNT_00777___    769 GCAGTGCAATTTG-CATCTGA-GTATTCTCCAAACAGCTTGAATG-----    811
                     ||.||.||||.|| ||||  | ..||||.||.||||||.|.||.|     
BPUM_2341___y    775 GCTGTTCAATATGCCATC--ACCCATTCACCGAACAGCATCAACGGCACA    822

BSNT_00777___    812 ------GACCGATCAAGAATGTCCCGGCCGTACAGCAAAGA---ACAGGC    852
                           ||||...||  ||||||            ||||.|   |..|||
BPUM_2341___y    823 ATTAGTGACCTGCCA--AATGTC------------CAAACACTGATTGGC    858

BSNT_00777___    853 GAAATGGAGCTTGAACTGCT----CAATGCCAGACACTT--TCTTTTCCA    896
                     |||||.|| |||  |||..|    ||| ||..|.|||.|  |||..||  
BPUM_2341___y    859 GAAATCGA-CTT--ACTATTAAAGCAA-GCACGCCACGTCATCTACTC--    902

BSNT_00777___    897 TATCGCTCA-ATTGTATGACGATCCGGAGCGGCGTCCACACTTGACAAGC    945
                      |.||..|| |||||||||..|.||.||               .|.|||.
BPUM_2341___y    903 -AACGACCACATTGTATGAAAAGCCAGA---------------AAAAAGA    936

BSNT_00777___    946 GAGC---------------TCGGTGCGGCTAAGCATA---TCGTCA--CA    975
                     ||||               |.|||||.|..|||||||   ||||.|  ||
BPUM_2341___y    937 GAGCTGTTAATCAATGAATTTGGTGCTGTGAAGCATACTGTCGTTAATCA    986

BSNT_00777___    976 AACGCTGCGCTGTCT----GTTGTTGATAAAGCGATGAGAATTGTCGGGG   1021
                     .|         ||.|    |||||.||||||||.|||.|..|.|||||.|
BPUM_2341___y    987 TA---------GTTTGCAAGTTGTCGATAAAGCTATGCGTTTAGTCGGTG   1027

BSNT_00777___   1022 CCAA------AAGCCTGGAACGAACCAACCCGCTTCAGCGCTATTACCGT   1065
                     |.||      ||||||.||      |...||.||.||||||||.||.||.
BPUM_2341___y   1028 CGAAAAGCTTAAGCCTAGA------CTGTCCACTGCAGCGCTACTATCGA   1071

BSNT_00777___   1066 GATGTGCGCGCCGGTCTTCACAACCCGCCGATGG-----ATGACGCCGTG   1110
                     |||.|.||.|||||.||.||.||||||||.||||     |||||     |
BPUM_2341___y   1072 GATATTCGTGCCGGGCTCCATAACCCGCCAATGGACGATATGAC-----G   1116

BSNT_00777___   1111 ATA-CACAAGCTGGCGGCTGAA----GCGTTT---GAGTCATAA------   1146
                     ||| || ||..||||    |||    ||..||   |||..|.||      
BPUM_2341___y   1117 ATATCA-AAAATGGC----GAAACAGGCCATTCAAGAGAAAAAAGAGAGC   1161

BSNT_00777___   1146 ---   1146
                        
BPUM_2341___y   1162 TAA   1164


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