Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00777 and BPUM_2341
See
Amino acid alignment /
Visit
BSNT_00777 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:33
# Commandline: needle
# -asequence dna-align/BSNT_00777___ydbM.1.24716.seq
# -bsequence dna-align/BPUM_2341___ydbM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00777___ydbM-BPUM_2341___ydbM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00777___ydbM-BPUM_2341___ydbM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00777___ydbM
# 2: BPUM_2341___ydbM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1353
# Identity: 721/1353 (53.3%)
# Similarity: 721/1353 (53.3%)
# Gaps: 396/1353 (29.3%)
# Score: 1736.0
#
#
#=======================================
BSNT_00777___ 1 ATGT------CATTATTT----ATAC----------AAAAC-------GA 23
.||| |||||||| |||| ||||| .|
BPUM_2341___y 1 TTGTCTAAAGCATTATTTGTCGATACCGATTTTCAAAAAACATGGCTTCA 50
BSNT_00777___ 24 TCAACAGCGGCAATGGA------TGGAGAAA--ATCGGACGGATTGCGGA 65
||||| |.|| |.|.|||| ||||
BPUM_2341___y 51 TCAAC--------TAGAATCTCTTCGTGAAACGATCG------------- 79
BSNT_00777___ 66 TGAATTTCAGCAAACTGCTGCTGAAGATGACGAACAGGGACG----TTTT 111
|.|||||.||....|||.||||.||| |.|| ||||
BPUM_2341___y 80 --------AACAAACGGCAAAAGAACATGATGAA----GGCGCTTATTTT 117
BSNT_00777___ 112 CCTGCAGAGAAAATACAAAAACTGCGTGAT-------GCTGGG-TATACA 153
||| ||||| |||.|.||..|.|| |.|||| |||||
BPUM_2341___y 118 CCT-----GAAAA---AAATATTGAATCATTAATAGAGATGGGCTATAC- 158
BSNT_00777___ 154 GCATTAACATTGCCGGCATC-TCATG------GCGGAGGGGGCATT---T 193
|||.|||.| || ||.|| .||||||.|||..| |
BPUM_2341___y 159 -----AACGTTGTC----TCTTCCTGCTGAACACGGAGGCGGCGGTCAAT 199
BSNT_00777___ 194 CTGTTTACGATATGCTCCTGTTTCAAGAG-----CGGCTTGCACGGGGAG 238
||||..|.||||||.|.|||||||||||| |||| ||
BPUM_2341___y 200 CTGTGAAGGATATGGTTCTGTTTCAAGAGACACTCGGC----------AG 239
BSNT_00777___ 239 -ATGCTCCGACGG-----CT--CTTAGC-ATCGGCTGGCA---------T 270
||| ||||| || ||||.| ||||||||||| |
BPUM_2341___y 240 TATG----GACGGAGCAACTACCTTATCAATCGGCTGGCACCAAGGGGTT 285
BSNT_00777___ 271 TTGAGCGTGATCGGGGAGCTTGGAGAAGGCAACAGCTGGGATGAAGACGT 320
.|..|||.||||...|| ||.|.|||| .|||.||| ||..|.
BPUM_2341___y 286 GTAGGCGAGATCTACGA--------AAAGAAACA-ATGGAATG-AGCAGC 325
BSNT_00777___ 321 ATTTGC-ATTTGTTGCCAAGGAAGTCCAAAACGGAGCCGTCATTAACAGG 369
|..||| |||..||||..|.|||||..|.||.||.|||.||.|.|||.|.
BPUM_2341___y 326 AGCTGCAATTCTTTGCGGAAGAAGTGAAGAAGGGCGCCCTCGTCAACCGT 375
BSNT_00777___ 370 GCGGCGACTGAAGCGAAAACCGGAAGCCCGACAAGAGGAGGGCGTCCCGG 419
||.|..|..||.|||.|.||.||.||.||.||||||||.|||...||.||
BPUM_2341___y 376 GCCGTAAGCGAGGCGCAGACAGGCAGTCCAACAAGAGGCGGGAAGCCTGG 425
BSNT_00777___ 420 TACACACGCCGTCAAAAAG------GATGGCA---AATGGGCAGTG---- 456
.|| ||.|| ||| || |||| ||||
BPUM_2341___y 426 GAC-----------AACAGCTACTAGAT--CAGGTAATG---AGTGGATT 459
BSNT_00777___ 457 ---AACGGGAGAAAAACCTTTACGACGATGTCACAGGCTCTGGATTATTT 503
||.||..|.||||..||.||.||||||||||..||.||....||.||
BPUM_2341___y 460 ATCAATGGACGTAAAATTTTCACAACGATGTCACCAGCGCTTACATACTT 509
BSNT_00777___ 504 TTTAGTAACCGCATGGATTGAGGACAAACAAACAACAGGCGTGTTTCTCA 553
||||||....|.|||||||||.||.|||.|..|.|..|||.|.||..|.|
BPUM_2341___y 510 TTTAGTCGGTGTATGGATTGAAGAAAAAGAGGCTATGGGCTTCTTCTTAA 559
BSNT_00777___ 554 TTCAT------AAAGATGATCCCGGCTTGTCGATTGAAGAAACGTGGGAT 597
||||| |.|| |.||..|.||.||.||||||||||||.|
BPUM_2341___y 560 TTCATCGTGAGACAG------CAGGTGTTTCAATAGAAGAAACGTGGAA- 602
BSNT_00777___ 598 ATGATGGCGATGCGGGCGTCTGGGAGCCATGACCTTGTACTGAACGAAGT 647
||.||.|||| .||.||| |.||||| ||||
BPUM_2341___y 603 -------CGTTGTGGGC--ATGAGAG----------GAACTGA---AAGT 630
BSNT_00777___ 648 CATGCTT--------GAT---------------GAGAATAAGCTGGTGGA 674
||||.|| ||| ||..|||.|||.||.||
BPUM_2341___y 631 CATGATTTAATTTTAGATCAGGTGAAGGTTTCAGATGATATGCTTGTTGA 680
BSNT_00777___ 675 ACTGCTTCAAGGGCCTCGCGGAGCTAAGCCGAATGGCTGGCTGCTTCACA 724
..|||...|||||||.|||||.|.||.||..|||...|||.| |.||||
BPUM_2341___y 681 GGTGCAAAAAGGGCCACGCGGTGGTACGCTAAATCCTTGGAT--TGCACA 728
BSNT_00777___ 725 T------TCCGGCGATTTATCTTGGTGTGGCTCAAGCTGCTCGTGACTAT 768
| |||.||.||||| ||..|.||.|||||.||..|.||.|||
BPUM_2341___y 729 TATTCCGTCCTGCTATTTA----GGGATTGCACAAGCAGCAAGGGATTAT 774
BSNT_00777___ 769 GCAGTGCAATTTG-CATCTGA-GTATTCTCCAAACAGCTTGAATG----- 811
||.||.||||.|| |||| | ..||||.||.||||||.|.||.|
BPUM_2341___y 775 GCTGTTCAATATGCCATC--ACCCATTCACCGAACAGCATCAACGGCACA 822
BSNT_00777___ 812 ------GACCGATCAAGAATGTCCCGGCCGTACAGCAAAGA---ACAGGC 852
||||...|| |||||| ||||.| |..|||
BPUM_2341___y 823 ATTAGTGACCTGCCA--AATGTC------------CAAACACTGATTGGC 858
BSNT_00777___ 853 GAAATGGAGCTTGAACTGCT----CAATGCCAGACACTT--TCTTTTCCA 896
|||||.|| ||| |||..| ||| ||..|.|||.| |||..||
BPUM_2341___y 859 GAAATCGA-CTT--ACTATTAAAGCAA-GCACGCCACGTCATCTACTC-- 902
BSNT_00777___ 897 TATCGCTCA-ATTGTATGACGATCCGGAGCGGCGTCCACACTTGACAAGC 945
|.||..|| |||||||||..|.||.|| .|.|||.
BPUM_2341___y 903 -AACGACCACATTGTATGAAAAGCCAGA---------------AAAAAGA 936
BSNT_00777___ 946 GAGC---------------TCGGTGCGGCTAAGCATA---TCGTCA--CA 975
|||| |.|||||.|..||||||| ||||.| ||
BPUM_2341___y 937 GAGCTGTTAATCAATGAATTTGGTGCTGTGAAGCATACTGTCGTTAATCA 986
BSNT_00777___ 976 AACGCTGCGCTGTCT----GTTGTTGATAAAGCGATGAGAATTGTCGGGG 1021
.| ||.| |||||.||||||||.|||.|..|.|||||.|
BPUM_2341___y 987 TA---------GTTTGCAAGTTGTCGATAAAGCTATGCGTTTAGTCGGTG 1027
BSNT_00777___ 1022 CCAA------AAGCCTGGAACGAACCAACCCGCTTCAGCGCTATTACCGT 1065
|.|| ||||||.|| |...||.||.||||||||.||.||.
BPUM_2341___y 1028 CGAAAAGCTTAAGCCTAGA------CTGTCCACTGCAGCGCTACTATCGA 1071
BSNT_00777___ 1066 GATGTGCGCGCCGGTCTTCACAACCCGCCGATGG-----ATGACGCCGTG 1110
|||.|.||.|||||.||.||.||||||||.|||| ||||| |
BPUM_2341___y 1072 GATATTCGTGCCGGGCTCCATAACCCGCCAATGGACGATATGAC-----G 1116
BSNT_00777___ 1111 ATA-CACAAGCTGGCGGCTGAA----GCGTTT---GAGTCATAA------ 1146
||| || ||..|||| ||| ||..|| |||..|.||
BPUM_2341___y 1117 ATATCA-AAAATGGC----GAAACAGGCCATTCAAGAGAAAAAAGAGAGC 1161
BSNT_00777___ 1146 --- 1146
BPUM_2341___y 1162 TAA 1164
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.