Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00370 and BPUM_2340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:16
# Commandline: needle
# -asequence dna-align/BSNT_00370___ybxI.1.24716.seq
# -bsequence dna-align/BPUM_2340.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00370___ybxI-BPUM_2340.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00370___ybxI-BPUM_2340.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00370___ybxI
# 2: BPUM_2340
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1000
# Identity: 557/1000 (55.7%)
# Similarity: 557/1000 (55.7%)
# Gaps: 239/1000 (23.9%)
# Score: 1376.0
#
#
#=======================================
BSNT_00370___ 1 ---------------------GTGCCTTTTG----ATTATTTTTTAAAGG 25
||.||||.|| ||...|| .||.
BPUM_2340 1 TTGAAAGAAAAGAGGACATGTGTACCTTATGTCCCATCGCTT----CAGC 46
BSNT_00370___ 26 AAG-AACAAAC---GAAAGAGAGAGAAAAGG-----TAGTTAATCAAAAC 66
|.| .||||.| ||||....||||||||| |.|||
BPUM_2340 47 ATGCTACAATCATGGAAATCATGAGAAAAGGAGCGATTGTT--------- 87
BSNT_00370___ 67 GAAGGGGAGAACAAAATGAA-AAAATGGATATA-------TGTTGTGCTT 108
.|||| ||||.|.||||| |||| |.|||
BPUM_2340 88 ---------------TTGAAGAAAAAGTATATAAAAAGGCTGTT-TTCTT 121
BSNT_00370___ 109 G-----TGCTGAGTATTGCA---GGGATCGGCGGCTTCTCCGTCCACGCA 150
| ||||| ||.||| .|.|||.|| ||
BPUM_2340 122 GCATCATGCTG---ATGGCATTTTGTATCAGC----------------CA 152
BSNT_00370___ 151 G-CGTCATCTGCTCATGAAAAACACTTGAATGTCAGCAGAATGAAT---- 195
| |.||||| ||| ||| ||||..||.|||
BPUM_2340 153 GCCATCATC-----------AAC---TGA-----AGCAAGATCAATAGCG 183
BSNT_00370___ 196 --GTC-GATGATGAATTC---AAGGATACGGATGGAACCTTCATTCTTCA 239
||| |..||||||||| ||..||..|||.||.||.||..|..||||
BPUM_2340 184 TGGTCTGTAGATGAATTCTTTAAAAATCGGGAAGGCACGTTTGTGATTCA 233
BSNT_00370___ 240 CGATTTACAAAAGGAGCAGACATTTGTCTATAACAGAAAACGGGCAAATC 289
.||..||.||.|..||....|||..||.|||||||.||||.|.|| .
BPUM_2340 234 AGAAGTAAAAGAAAAGTCCCCATGGGTGTATAACAAAAAAAGAGC----G 279
BSNT_00370___ 290 AAAGA--------CAAACTCCGCAATCCACCTTTAAAGTCGTGAACGCTT 331
||||| || ||.|||||.||.|||||.||.|..||.||.|
BPUM_2340 280 AAAGAGCGCTTTGCA----CCTCAATCGACATTTAAGGTAGCAAATGCCT 325
BSNT_00370___ 332 TAATCGGTTTGCAGGTCAAA-----GCTGTAAGAGATGAATACGATGTTA 376
||||||| |...|||| ||.||.||||||||||||||..|.|
BPUM_2340 326 TAATCGG-----ACTCCAAACAGGCGCAGTGAGAGATGAATACGACATCA 370
BSNT_00370___ 377 AACGATGGGACGGGGTCAAGCGTGA-ATTCGAATCA--TGGAACCGCGAC 423
||...|||||.||.||.||..|.|| ||| || || |||||..|.||.
BPUM_2340 371 AATATTGGGATGGCGTAAAAAGAGAGATT-GA--CAATTGGAATAGAGAT 417
BSNT_00370___ 424 CATACGCTTGGCTCGGCCATGCGCGAATCCGCAATCTGGTATTATCAGGC 473
|||||..|.||.||.|.||||.|.||.||.|...|||||||.|||||.||
BPUM_2340 418 CATACATTAGGATCTGGCATGAGAGATTCAGTCGTCTGGTACTATCAAGC 467
BSNT_00370___ 474 ATTAGCGAGAGATATCGGCGAGGAAAGGATGAAATCATGGCTTCATACAC 523
..|.||..|.||.||.||.||.|||.|.||| ||||||.|..|.| |..|
BPUM_2340 468 CATGGCACGTGACATTGGAGAAGAACGCATG-AATCATTGGGTGA-AAGC 515
BSNT_00370___ 524 TAT--CTTACGGCAACGAGG--ATATCAGCGGGGGAATCGACCAGTTTTG 569
||| .|||.||.|||.|.| ||||| .||.||||||||.||.|||||
BPUM_2340 516 TATTCATTATGGGAACAAAGACATATC--TGGCGGAATCGATCAATTTTG 563
BSNT_00370___ 570 GCTGCAAAGC---TCGCTCAC-AATATCTCCGCTGGAACAAG-------- 607
|.| |||| .|.|| || |||.|||||..|.|||||||
BPUM_2340 564 GTT---AAGCAGTACCCT-ACGAATTTCTCCCATCGAACAAGTTCGTTTT 609
BSNT_00370___ 608 ---AAACCTTTTTGGAGAAACTATTTAAAGAGGAGCTTCCATTTGAC--A 652
|||| |.||||.|.|||||...|||||||||||| |
BPUM_2340 610 CTCAAAC-----------AGCTATATGAAGAGACTCTTCCATTTGACCTA 648
BSNT_00370___ 653 AACCGGTGATGAAAACCGTCAAGCGCATGATGATTCAAGAGGAAGGCGAT 702
|| |...||||.|||.|||||.||.||||||.|.|||||.||||...|.
BPUM_2340 649 AA--GAACATGAGAACAGTCAAACGAATGATGGTACAAGAAGAAGAGAAA 696
BSNT_00370___ 703 CATTACACGCTCTACGGGAAAACCGGAACTCGCCTGA-CTGATATGGGAT 751
||...|||.||.|||||.|||||.|| |.||.|| |.||.|
BPUM_2340 697 CACGCCACCCTATACGGAAAAACAGG----CTCCGGATCAGACA------ 736
BSNT_00370___ 752 TAGGATGGTTTGTCGGATTCATCAA-----AACAGAGCATGGCTCTTATG 796
|.||.||||..||.||.||.||||| ||||.|..| |.||..
BPUM_2340 737 TCGGCTGGTACGTAGGTTTTATCAAACATGAACACAAAA-----CCTACA 781
BSNT_00370___ 797 TCTTTGTCACCAATGTCGATGATTCCGGCACAAAAGCCAAAAACATCACC 846
||.|.|.|||.|||.||.|.|...||||||.|.||||.|||.||||||||
BPUM_2340 782 TCCTCGCCACAAATATCAAAGGCACCGGCATAGAAGCAAAAGACATCACC 831
BSNT_00370___ 847 GTAGATATC-----CTGAAAAAGTATGGCCTGAT---CACATCC--TAA- 885
|||| .|||||||.|||....|||| ..||||| |.|
BPUM_2340 832 -----TATCGCATTTTGAAAAAATATCATTTGATGGAAGCATCCGTTTAG 876
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