Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00616 and BPUM_2334
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:24
# Commandline: needle
# -asequence dna-align/BSNT_00616___hxlR.1.24716.seq
# -bsequence dna-align/BPUM_2334___hxlR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00616___hxlR-BPUM_2334___hxlR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00616___hxlR-BPUM_2334___hxlR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00616___hxlR
# 2: BPUM_2334___hxlR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 381
# Identity: 256/381 (67.2%)
# Similarity: 256/381 (67.2%)
# Gaps: 42/381 (11.0%)
# Score: 819.0
#
#
#=======================================
BSNT_00616___ 1 ------TTG--AGC-CGGATGGACGACAAAAGGTTTAATTGTGAGAAGGA 41
||| |.| ||.|||||..|.|||..|||.||.||.||.|||||
BPUM_2334___h 1 ATGTCGTTGTCATCACGAATGGAAAATAAAGTGTTCAACTGCGAAAAGGA 50
BSNT_00616___ 42 ATTAACGCTTGCA-GTGATTGGCGGTAAATGGAAAATGCTCATTTTATGG 90
..|.|||| ||.| .|.||.||||||||.|||||||||||.|||||||||
BPUM_2334___h 51 GCTGACGC-TGAATATTATCGGCGGTAAGTGGAAAATGCTGATTTTATGG 99
BSNT_00616___ 91 CATTTAGGAAAAGAAGGCACAAAACGGTTCAATGAATTAAAAACATTGAT 140
||..|.||.|.|||.||.|||||||||||...|||.|||||..|.||.||
BPUM_2334___h 100 CACCTTGGCAGAGAGGGGACAAAACGGTTTGGTGAGTTAAAGTCGTTAAT 149
BSNT_00616___ 141 TCCTGATATTACGCAGAAG-ATCCTCGTGAATCAGCTGAGAGAGCTTGAG 189
.||||..|||||||| ||| ||.||.||.||||||||.|||||..|.|||
BPUM_2334___h 150 GCCTGGAATTACGCA-AAGAATGCTTGTCAATCAGCTAAGAGAATTAGAG 198
BSNT_00616___ 190 CAGGATATGATTGTTCACAGGGAAGTGTATCCAGTTGTCCCGCCGAAGGT 239
.|.||....|||||.|||.||||.||.|||||.||.||.|||||.|||||
BPUM_2334___h 199 GAAGACCACATTGTGCACCGGGAGGTTTATCCTGTCGTTCCGCCAAAGGT 248
BSNT_00616___ 240 TGAATATTCTCTGACCCCGCAC--GGAGAAAGCCTCATGCCTATTCTTGA 287
|||.|||||..||| |.|.|| |||||||||.|.|||||.|||.|.||
BPUM_2334___h 249 TGAGTATTCCTTGA--CAGAACTAGGAGAAAGCTTAATGCCGATTTTAGA 296
BSNT_00616___ 288 AGCCATGTATGAGTGGGGGAAAGGTTATAT-----GGAATTGATTGATAT 332
.||.||||||||.|||||.|||...|||.| |.||||..||
BPUM_2334___h 297 GGCGATGTATGATTGGGGAAAACAGTATCTCGATAGCAATTTTTT----- 341
BSNT_00616___ 333 CGACAAAAATGTCATGAAAGAATCGTTGTAA 363
|||.| ||||.| |||.|
BPUM_2334___h 342 ------AAAGG--ATGATA-AATAG------ 357
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