Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05850 and BPUM_2331
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:26
# Commandline: needle
# -asequence dna-align/BSNT_05850___ywbO.1.24716.seq
# -bsequence dna-align/BPUM_2331.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05850___ywbO-BPUM_2331.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05850___ywbO-BPUM_2331.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05850___ywbO
# 2: BPUM_2331
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 845
# Identity: 379/845 (44.9%)
# Similarity: 379/845 (44.9%)
# Gaps: 361/845 (42.7%)
# Score: 699.5
#
#
#=======================================
BSNT_05850___ 1 ATGACAGTACACATTAAAGTTTATTCAGATTACGTCTGCCCATTTTGTTT 50
||||.||||| ||.|.|..||||||..||.|||.||.|||||||.
BPUM_2331 1 ATGAAAGTAC------AAATCTGGTCAGATATCGCCTGTCCTTTTTGTTA 44
BSNT_05850___ 51 TGTTGGAA------------AAGCCGCTTTTGAAGAAGCGAT-------A 81
|.|.|||| ||.|.||..||||| |.|| |
BPUM_2331 45 TATAGGAAAAAAACAACTAGAAACAGCGCTTGAA----CAATTCCCTCAA 90
BSNT_05850___ 82 AAAGGAAAGGATGTTGAAGTCGAG--TGGATGCCGTTTGAACTGCGCCCA 129
||||.|.|| ||.|||.||||| |..|.|| |||||.||....|||
BPUM_2331 91 AAAGAACAG---GTGGAAATCGAGTTTAAAAGC--TTTGAGCTTGATCCA 135
BSNT_05850___ 130 AGTCCATCTCCT------CAGCTTGATCCGGTCAATGA-----TCCTTCC 168
..|.||.||.|| .|..||||| |||.|||| ||.| |
BPUM_2331 136 CATGCACCTGCTGATGTCGATTTTGAT---GTCCATGATATGCTCGT--C 180
BSNT_05850___ 169 AAACAGTA---CATGTG--GCAGACA-------TCGAT---TCAGCCAAT 203
|||.|.|| .|||.| ||||.|| .|||| |.|||..||
BPUM_2331 181 AAAAAATATGGGATGAGCCGCAGCCAGGCGATGGCGATGAATGAGCAGAT 230
BSNT_05850___ 204 GGCG------------GAGAAATTAGGAGTCGA-GATCAATTT--TCCAA 238
|..| ||||| ||||.|||| ..||||||| ||||.
BPUM_2331 231 GAAGCAGGCCGGCAAAGAGAA---AGGAATCGATTTTCAATTTGATCCAC 277
BSNT_05850___ 239 ACGTCTCGCCCCATCCGTATACAGACCTCGCGTTTGAAGGCTTCCAT--- 285
.|||.|.|.| || ||| |.|||| |.||| |||
BPUM_2331 278 TCGTGTTGAC-------TA-ACA-------CCTTTG-ATGCT--CATCGA 309
BSNT_05850___ 286 TTTGCGAAGGAATA-------CAA-----TAAAGGACAT----------G 313
||.|| |.|||| ||| .|||||..|| |
BPUM_2331 310 TTGGC---GCAATATGCTGGTCAAATGGGGAAAGGCGATTTCGTTATGGG 356
BSNT_05850___ 314 AATACAACACCCGTG-TCTTTCAGGCGT-TTTTCCAAGAGGGCCAAA--A 359
| |.| |.|||||.||.| ||||.| |||.|| ||| |
BPUM_2331 357 A-----------GAGCTGTTTCAAGCATATTTTAC-AGATGG--AAAGCA 392
BSNT_05850___ 360 TATCGGC------------------GACATTGACA-----------TCTT 380
|.|.||| ||||||| || ||||
BPUM_2331 393 TGTTGGCGATCGTCAAACCCTTTTAGACATTG-CAGAAAAAGCAGGTCTT 441
BSNT_05850___ 381 G------ACGAAGCTCGCCGAGGAAGTGGGATTAGACGG---------TG 415
| |.||||..| ||.||.|| ||||..|| ||
BPUM_2331 442 GATTTGCAGGAAGTAC----AGCAAATG---TTAGGTGGCGAAGAGTTTG 484
BSNT_05850___ 416 C--ATCAT-TCAAATCAGCACTGGAAACAAGAACATATCAGGACGTGCAG 462
| ||||| | |.|.|||.|.||||| ||
BPUM_2331 485 CTGATCATGT----------CCGAAAAGATGAACA-------------AG 511
BSNT_05850___ 463 CGCCAAGCCTTGAAGCACGCT---TATGAAGAGGCTGACATCACAGCCGT 509
|||| ||..|| ||| |||.| |.|||| ..||||
BPUM_2331 512 ----AAGC---GAGACA-GCTTGGTATTA--ATGCTG-------TTCCGT 544
BSNT_05850___ 510 TCCAACCTTTATT-ATCGGCGACACTGTAATTC-----CAGGTGCT--GC 551
| |||.|| |||...|||| .|| |||| |||||||| ||
BPUM_2331 545 T------TTTCTTGATCAATGACA-AGT-ATTCAGTTGCAGGTGCTCAGC 586
BSNT_05850___ 552 CGGCAAGGA------------TGTATTTGAAAAAGC---GATTTCTGACG 586
|.|| .|| ||.|.||||||..|| || |.||.|
BPUM_2331 587 CAGC--TGATACGTTCCTGCGTGCACTTGAAACGGCATGGA---CAGAAG 631
BSNT_05850___ 587 -AGCAG---AA---GAAAAAG-------TAA------------------- 603
||||| || ||.|||| |||
BPUM_2331 632 AAGCAGCTCAAGCTGAGAAAGCGGCTGCTAATTCGTTTGAAGCGGCATGT 681
BSNT_05850___ 603 --------------------------------------------- 603
BPUM_2331 682 GCAGATGGCGTATGCGCAGTGCCTACCCCTAAAGAAGAAGCGTAA 726
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