Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04200 and BPUM_2328
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_04200___araD.1.24716.seq
# -bsequence dna-align/BPUM_2328___araD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04200___araD-BPUM_2328___araD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04200___araD-BPUM_2328___araD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04200___araD
# 2: BPUM_2328___araD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 791
# Identity: 452/791 (57.1%)
# Similarity: 452/791 (57.1%)
# Gaps: 187/791 (23.6%)
# Score: 1066.0
#
#
#=======================================
BSNT_04200___ 1 ATGCTTGAAACATTAAAAAAAGAAGTGCTGGCTGCCAACCTGAAGCTTCA 50
|||||.|||...||||||.|||||||..|.|..||||| |..||.||.|
BPUM_2328___a 1 ATGCTAGAACGCTTAAAAGAAGAAGTATTCGAAGCCAA--TTTAGATTTA 48
BSNT_04200___ 51 -AGAGCATCAG------CTGGTAACCTTTACGTGGGGAAATGTCAGCGGC 93
.|| || ||.||.|..||.||.|||||.|||||||| .||
BPUM_2328___a 49 CCGA-----AGTACGGACTTGTGAAATTCACATGGGGCAATGTCAG-TGC 92
BSNT_04200___ 94 AT-TGACCGTGAAAAAGAAAGAATTGTCATCAAACCTAGCGGAGTCGAAT 142
.| |||.|||||.|..|....|.||||.||.||.|||||||| |
BPUM_2328___a 93 GTGTGATCGTGACAGCGGTCTATTTGTTATTAAGCCTAGCGG-------T 135
BSNT_04200___ 143 ACAGC----GACC--TTA-CAGCAGATGACTTGGTTGTTTTGAACCTTGA 185
|.||| ||.| ||| ||||..|.||..|||||||..|..||.||||
BPUM_2328___a 136 ATAGCGTATGATCAATTATCAGCGAAAGATATGGTTGTAGTCGACTTTGA 185
BSNT_04200___ 186 TGGAGAGGTCGTCGAAGGCTCGCTTA-AG-CCTTCTTCAGATACACCTAC 233
.||.||.||.||.||||| .|..|| || |||||.|||||||||.|.||
BPUM_2328___a 186 CGGTGAAGTAGTGGAAGG--GGAATACAGCCCTTCATCAGATACAGCAAC 233
BSNT_04200___ 234 CCATGTTTATCTATATAAAGCCTTTCCGA--ATATCGGGGGAATTGTC-C 280
.||.|.|...||.||.|||..|||| || |.|||||.||.||| || |
BPUM_2328___a 234 ACACGCTGTCCTTTACAAACACTTT--GATGAAATCGGCGGTATT-TCAC 280
BSNT_04200___ 281 ATACCCATTCCCAATGGGCGACAAGCTGGGCGCAATCGGGCAGAGACATC 330
|||.|||||||...|||||.||....|||||||| ||||| .
BPUM_2328___a 281 ATAGCCATTCCATGTGGGCAACCGTTTGGGCGCA----GGCAG------G 320
BSNT_04200___ 331 CCTCCGTT---AGGC-------ACGACCCATGCTGAT-TATTTTGACAGT 369
.|||..|| |||| ||.||.||||||||| .||||| ||.||
BPUM_2328___a 321 TCTCGATTTACAGGCAATGGGTACAACACATGCTGATACATTTT-ACGGT 369
BSNT_04200___ 370 GCGATTCCATGTACTCGA-----GAAATGTATGATGAAGAAATCATTC-- 412
||..||||||||.||||| ||.| ||.||||||.|||.||
BPUM_2328___a 370 GCTGTTCCATGTGCTCGATTTCTGACA-----GAAGAAGAAGTCAATCGC 414
BSNT_04200___ 413 ----ATGA-CTACGAAC--------TGAATACAGGAAAAGTCATAGCGGA 449
|||| .||..||| ||| |||| .||
BPUM_2328___a 415 GGTTATGAGGTAGAAACGGGCCGGTTGA------------TCAT---CGA 449
BSNT_04200___ 450 AACCTTTCAGCATCATAACTACGAA---------------CAGGTGCCGG 484
|||.|||.||.| |.||| || |||||.|
BPUM_2328___a 450 AACGTTTGAGAA--------AAGAAATCTAGATGTGATGGCA-GTGCCAG 490
BSNT_04200___ 485 GTG---TGCTCGTGAATAATCACGGACCGTTCTGC-TGGGGCACTGACGC 530
||| |||| |.|| ...|||||.||.|| |.| |||||.|..||.||
BPUM_2328___a 491 GTGTATTGCT--TCAA-GGCCACGGCCCATT-TACGTGGGGGAAAGATGC 536
BSNT_04200___ 531 CTTAAATGCCATTCATAACGCAGT-TG-TATTAGAAACGGTTGCCGAAAT 578
...||.|| |..|||.|| .|||| || |.||||||...||.|||.||||
BPUM_2328___a 537 AAAAAGTG-CGGTCACAA-ACAGTGTGATTTTAGAAGAAGTCGCCAAAAT 584
BSNT_04200___ 579 GGCCTATCACTCTATTATGCTGAACAAGGATGTAACCCCAATCAATAC-- 626
| |.|.|||| .||..|.|||..| |||.|||||
BPUM_2328___a 585 G-------AATTTATT-CGCAAAGCAATTA---------AATGAATACGC 617
BSNT_04200___ 627 --AGTCCT-----GCA---------TGAAAAGCATT--TTTATCGAAAAC 658
|| ||| ||| .||.||.|||| ||.| ||||||
BPUM_2328___a 618 GGAG-CCTCTTCCGCAGCGAATTTTAGATAAACATTACTTAA--GAAAAC 664
BSNT_04200___ 659 ACGGAGCAAATGCGTATTATGGCCA------GTCATGA--- 690
|.||.|.|.||||||||||.||.|| .|||..|
BPUM_2328___a 665 ATGGCGAACATGCGTATTACGGACAAAAACCTTCAACATAA 705
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