Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03822 and BPUM_2306

See Amino acid alignment / Visit BSNT_03822 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:23
# Commandline: needle
#    -asequence dna-align/BSNT_03822___yqeF.1.24716.seq
#    -bsequence dna-align/BPUM_2306___yqeF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03822___yqeF-BPUM_2306___yqeF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03822___yqeF-BPUM_2306___yqeF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03822___yqeF
# 2: BPUM_2306___yqeF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity:     487/776 (62.8%)
# Similarity:   487/776 (62.8%)
# Gaps:          91/776 (11.7%)
# Score: 1328.5
# 
#
#=======================================

BSNT_03822___      1 ---ATGAAACATTTTATCATCCTTTTCCTTCTGCTGTTCGTTACAGCAGG     47
                        |.||||.||.||   .||||||||.|.|||.|.|..||..|.||.||
BPUM_2306___y      1 GTGAAGAAATATGTT---GTCCTTTTCATCCTGATTTGTGTCGCTGCTGG     47

BSNT_03822___     48 ATGCGAGGGAAGGGGATACGAAGA---CGTTGTAGCATTTGGTGACAGTA     94
                     .|||   ..||.|..|.||.||||   .||..|.||||||||.|||||.|
BPUM_2306___y     48 GTGC---TCAAAGCCAGACCAAGAAAGTGTCATTGCATTTGGCGACAGCA     94

BSNT_03822___     95 ATACGCGTGGCTCAAATTGGGATTATCGCGATTATCCAAAAGCACAGCAG    144
                     ||||....||.|||||.|||||.|.|||.||||||||||.|.|..|..|.
BPUM_2306___y     95 ATACAAAGGGATCAAACTGGGACTTTCGAGATTATCCAACATCTGAAAAA    144

BSNT_03822___    145 TGGGTCAATAT-ATTAAAAACAGCTGAGCGCGGTAACCTTGATATACTCA    193
                     |||||.|||.| ||.|||||| |..|||||||||.|..||.|..|....|
BPUM_2306___y    145 TGGGTGAATCTCATGAAAAAC-GTCGAGCGCGGTCAAATTCAAGTGAAGA    193

BSNT_03822___    194 ATGCGGGAATCGGCGGACAGACGACAGAGGATGCCCGTCTCCGATTTCAG    243
                     |.||.|||||.|||||.||||||||.||.|||||....||.||.|||.||
BPUM_2306___y    194 ACGCAGGAATTGGCGGGCAGACGACTGAAGATGCGAAGCTGCGCTTTGAG    243

BSNT_03822___    244 ACA-GATGTGCTGGATCAAAAACCGAAG--TATTTGTTTATTATGTTCGG    290
                      || |||.|..|..|.||.|||||  ||  ||..|..|.||.||||||||
BPUM_2306___y    244 -CAGGATATTTTAAAGCAGAAACC--AGCTTACGTCCTCATCATGTTCGG    290

BSNT_03822___    291 CACCAATGACGCTGCCATACT-GACTGAAGGGAAA---CCGAGAGTGTCG    336
                     .||.|||||.||.||.||..| |||    ||||||   ||..|||||.||
BPUM_2306___y    291 GACGAATGATGCGGCGATTTTAGAC----GGGAAACATCCCCGAGTGACG    336

BSNT_03822___    337 AAGCAGCGTTTTAGAGAAAATCTGGTTTATTTTATTGAAGAAAGCAGAAA    386
                     ||..|..|.||||.||||||..|....||.||.|||...||.||.|||||
BPUM_2306___y    337 AAAAAAAGATTTAAAGAAAACATAACCTACTTCATTTCTGAGAGTAGAAA    386

BSNT_03822___    387 A-CACGGGATCAAGCCTATCTTAATGACGTGTATCCCAATTATAGAAGGT    435
                     | || ||.||.|..||.||..|.|||||.|||.|.||..||.||||||| 
BPUM_2306___y    387 AGCA-GGCATTACCCCGATTCTCATGACCTGTGTACCTGTTGTAGAAGG-    434

BSNT_03822___    436 AATGGGAA------GCATCATCTGTTTTACTATTCCAGATACCAAG-CAG    478
                        .||||      ||     .|||.|||.||.||.||.|| .||| ||.
BPUM_2306___y    435 ---CGGAAAAAAGGGC-----TTGTATTATTACTCTAGGTA-TAAGTCAT    475

BSNT_03822___    479 CTGCTTTTGAACCAAAAGGCGGAGCAAGGAAATGGCACAACTCATATAAC    528
                     ||..|||||.....|.||||||.|||||....|||||.||.||.|||||.
BPUM_2306___y    476 CTTATTTTGCTGAGAGAGGCGGGGCAAGAGCTTGGCAAAATTCCTATAAT    525

BSNT_03822___    529 GATATTACAAGAGATGTGTCGAAGCGCC-TGGAT------GTCCCTCTTG    571
                     ||.||.||.|||||       ||..||| .||||      ||.||.||||
BPUM_2306___y    526 GACATCACGAGAGA-------AATAGCCAAGGATCAGCAAGTACCGCTTG    568

BSNT_03822___    572 TAGATAACTGG-AAGCATTTTAT---AGAAGCAGACGGCGGAAAAGCAAC    617
                     |.||.|||||| |||| .||.||   ||||||      .||..|||..|.
BPUM_2306___y    569 TCGACAACTGGAAAGC-GTTCATCCGAGAAGC------TGGTGAAGATAG    611

BSNT_03822___    618 TGATGAAGCGCTTATCCAATCTGGTTTAATAGATCCTTCTGGAAATCATA    667
                     |||..|.|||||.||.||.||.|||||.||.||.||||||||.|||||||
BPUM_2306___y    612 TGACAATGCGCTGATTCAGTCAGGTTTGATCGACCCTTCTGGCAATCATA    661

BSNT_03822___    668 TGACACCTAAAGGGGCAAGGATCGTATATGAAGGAATACAAGATGGGCAG    717
                     ||||.||.|||||||||||.||..|.||| ||.|||..|||       ||
BPUM_2306___y    662 TGACGCCAAAAGGGGCAAGAATTATTTAT-AACGAAATCAA-------AG    703

BSNT_03822___    718 ATCCTGCAG-CGTTGA----------    732
                     |.|.||..| |.||.|          
BPUM_2306___y    704 AACGTGATGTCATTAAACATTTTTAA    729


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.