Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03822 and BPUM_2306
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_03822___yqeF.1.24716.seq
# -bsequence dna-align/BPUM_2306___yqeF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03822___yqeF-BPUM_2306___yqeF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03822___yqeF-BPUM_2306___yqeF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03822___yqeF
# 2: BPUM_2306___yqeF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity: 487/776 (62.8%)
# Similarity: 487/776 (62.8%)
# Gaps: 91/776 (11.7%)
# Score: 1328.5
#
#
#=======================================
BSNT_03822___ 1 ---ATGAAACATTTTATCATCCTTTTCCTTCTGCTGTTCGTTACAGCAGG 47
|.||||.||.|| .||||||||.|.|||.|.|..||..|.||.||
BPUM_2306___y 1 GTGAAGAAATATGTT---GTCCTTTTCATCCTGATTTGTGTCGCTGCTGG 47
BSNT_03822___ 48 ATGCGAGGGAAGGGGATACGAAGA---CGTTGTAGCATTTGGTGACAGTA 94
.||| ..||.|..|.||.|||| .||..|.||||||||.|||||.|
BPUM_2306___y 48 GTGC---TCAAAGCCAGACCAAGAAAGTGTCATTGCATTTGGCGACAGCA 94
BSNT_03822___ 95 ATACGCGTGGCTCAAATTGGGATTATCGCGATTATCCAAAAGCACAGCAG 144
||||....||.|||||.|||||.|.|||.||||||||||.|.|..|..|.
BPUM_2306___y 95 ATACAAAGGGATCAAACTGGGACTTTCGAGATTATCCAACATCTGAAAAA 144
BSNT_03822___ 145 TGGGTCAATAT-ATTAAAAACAGCTGAGCGCGGTAACCTTGATATACTCA 193
|||||.|||.| ||.|||||| |..|||||||||.|..||.|..|....|
BPUM_2306___y 145 TGGGTGAATCTCATGAAAAAC-GTCGAGCGCGGTCAAATTCAAGTGAAGA 193
BSNT_03822___ 194 ATGCGGGAATCGGCGGACAGACGACAGAGGATGCCCGTCTCCGATTTCAG 243
|.||.|||||.|||||.||||||||.||.|||||....||.||.|||.||
BPUM_2306___y 194 ACGCAGGAATTGGCGGGCAGACGACTGAAGATGCGAAGCTGCGCTTTGAG 243
BSNT_03822___ 244 ACA-GATGTGCTGGATCAAAAACCGAAG--TATTTGTTTATTATGTTCGG 290
|| |||.|..|..|.||.||||| || ||..|..|.||.||||||||
BPUM_2306___y 244 -CAGGATATTTTAAAGCAGAAACC--AGCTTACGTCCTCATCATGTTCGG 290
BSNT_03822___ 291 CACCAATGACGCTGCCATACT-GACTGAAGGGAAA---CCGAGAGTGTCG 336
.||.|||||.||.||.||..| ||| |||||| ||..|||||.||
BPUM_2306___y 291 GACGAATGATGCGGCGATTTTAGAC----GGGAAACATCCCCGAGTGACG 336
BSNT_03822___ 337 AAGCAGCGTTTTAGAGAAAATCTGGTTTATTTTATTGAAGAAAGCAGAAA 386
||..|..|.||||.||||||..|....||.||.|||...||.||.|||||
BPUM_2306___y 337 AAAAAAAGATTTAAAGAAAACATAACCTACTTCATTTCTGAGAGTAGAAA 386
BSNT_03822___ 387 A-CACGGGATCAAGCCTATCTTAATGACGTGTATCCCAATTATAGAAGGT 435
| || ||.||.|..||.||..|.|||||.|||.|.||..||.|||||||
BPUM_2306___y 387 AGCA-GGCATTACCCCGATTCTCATGACCTGTGTACCTGTTGTAGAAGG- 434
BSNT_03822___ 436 AATGGGAA------GCATCATCTGTTTTACTATTCCAGATACCAAG-CAG 478
.|||| || .|||.|||.||.||.||.|| .||| ||.
BPUM_2306___y 435 ---CGGAAAAAAGGGC-----TTGTATTATTACTCTAGGTA-TAAGTCAT 475
BSNT_03822___ 479 CTGCTTTTGAACCAAAAGGCGGAGCAAGGAAATGGCACAACTCATATAAC 528
||..|||||.....|.||||||.|||||....|||||.||.||.|||||.
BPUM_2306___y 476 CTTATTTTGCTGAGAGAGGCGGGGCAAGAGCTTGGCAAAATTCCTATAAT 525
BSNT_03822___ 529 GATATTACAAGAGATGTGTCGAAGCGCC-TGGAT------GTCCCTCTTG 571
||.||.||.||||| ||..||| .|||| ||.||.||||
BPUM_2306___y 526 GACATCACGAGAGA-------AATAGCCAAGGATCAGCAAGTACCGCTTG 568
BSNT_03822___ 572 TAGATAACTGG-AAGCATTTTAT---AGAAGCAGACGGCGGAAAAGCAAC 617
|.||.|||||| |||| .||.|| |||||| .||..|||..|.
BPUM_2306___y 569 TCGACAACTGGAAAGC-GTTCATCCGAGAAGC------TGGTGAAGATAG 611
BSNT_03822___ 618 TGATGAAGCGCTTATCCAATCTGGTTTAATAGATCCTTCTGGAAATCATA 667
|||..|.|||||.||.||.||.|||||.||.||.||||||||.|||||||
BPUM_2306___y 612 TGACAATGCGCTGATTCAGTCAGGTTTGATCGACCCTTCTGGCAATCATA 661
BSNT_03822___ 668 TGACACCTAAAGGGGCAAGGATCGTATATGAAGGAATACAAGATGGGCAG 717
||||.||.|||||||||||.||..|.||| ||.|||..||| ||
BPUM_2306___y 662 TGACGCCAAAAGGGGCAAGAATTATTTAT-AACGAAATCAA-------AG 703
BSNT_03822___ 718 ATCCTGCAG-CGTTGA---------- 732
|.|.||..| |.||.|
BPUM_2306___y 704 AACGTGATGTCATTAAACATTTTTAA 729
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