Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03820 and BPUM_2302
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_03820___yqeG.1.24716.seq
# -bsequence dna-align/BPUM_2302___yqeG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03820___yqeG-BPUM_2302___yqeG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03820___yqeG-BPUM_2302___yqeG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03820___yqeG
# 2: BPUM_2302___yqeG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 527
# Identity: 266/527 (50.5%)
# Similarity: 266/527 (50.5%)
# Gaps: 184/527 (34.9%)
# Score: 949.0
#
#
#=======================================
BSNT_03820___ 1 TTGTTAAAAAAGTTTTTTTTACCTGACGAGTTTGTAAAAAATATTTTTCA 50
BPUM_2302___y 0 -------------------------------------------------- 0
BSNT_03820___ 51 TATTACACCTGAGAAATTAAAGGAACGAAATGTAAAAGGGATTATTACTG 100
BPUM_2302___y 0 -------------------------------------------------- 0
BSNT_03820___ 101 ACCTGGATAATACGCTTGTTGAATGGGACAGACCGAATGCGACGCCGCGA 150
BPUM_2302___y 0 -------------------------------------------------- 0
BSNT_03820___ 151 TTGATCGAGTGGTTTGAAGAAATGAAGGAACACGGCATTAAAGTGACAAT 200
||||||||.|||||.||..|||||||.||
BPUM_2302___y 1 ---------------------ATGAAGGATCACGGGATACAAGTGACGAT 29
BSNT_03820___ 201 TGTCTCTAATAATAACGAAAGAAGAGTGAAACTTTTCTCAGAACCGCTTG 250
|||.||.||.|||||.||||.|||.||.||.|||||.||.|||||..||.
BPUM_2302___y 30 TGTATCGAACAATAATGAAAAAAGGGTCAAGCTTTTTTCTGAACCAGTTC 79
BSNT_03820___ 251 GAATCCCATTCATCTATAAAGCAAGAAAACCGATGGGTAAAGCCTTTAAT 300
..|||||.||.||.||||||||.|.||||||||||||.|.|||.||||||
BPUM_2302___y 80 ATATCCCGTTTATTTATAAAGCGAAAAAACCGATGGGAAGAGCTTTTAAT 129
BSNT_03820___ 301 AGAGCGGTGCGCAATATGGAGCTGAAAAAAGAGGACTG-CGTTGTCATCG 349
|..||.||...|.|||||.|..||||||||||.|| || .||.||.||.|
BPUM_2302___y 130 AAGGCTGTCTCCGATATGCAATTGAAAAAAGAAGA-TGTGGTGGTGATTG 178
BSNT_03820___ 350 GAGACCAGCTGCTGACCGATGTACTCGGGGGAAACCGAAACGGCTACCAT 399
|.||.|||||..||||||||||.||.||.||.|||||..||||||.||||
BPUM_2302___y 179 GGGATCAGCTCATGACCGATGTTCTAGGCGGGAACCGTCACGGCTTCCAT 228
BSNT_03820___ 400 ACGATTTTGGTCGTGCCAGTCGCTTCCTCTGACGGA---TTCATTACGCG 446
||.||||||||.||.||.||.|||.|.||.|||||| ||||.||.|
BPUM_2302___y 229 ACAATTTTGGTTGTCCCTGTTGCTGCTTCAGACGGATTTTTCACTAAG-- 276
BSNT_03820___ 447 CTTTAACCGCCAGGTCGAACGCAGAATACTGAGTGCTCTCAAA-CGAAAA 495
||||||.|.|||.|.|||||||||||..|..|.|| ||.||| ||.||.
BPUM_2302___y 277 -TTTAACAGGCAGATTGAACGCAGAATTTTAGGAGC-CTTAAAGCGTAAG 324
BSNT_03820___ 496 GGGCACATTCAGTGGGAG---GAGTAA 519
||.||||||||||||||| ||||||
BPUM_2302___y 325 GGCCACATTCAGTGGGAGGAAGAGTAA 351
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