Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03818 and BPUM_2300
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_03818___aroD.1.24716.seq
# -bsequence dna-align/BPUM_2300___aroE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03818___aroD-BPUM_2300___aroE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03818___aroD-BPUM_2300___aroE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03818___aroD
# 2: BPUM_2300___aroE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 913
# Identity: 593/913 (65.0%)
# Similarity: 593/913 (65.0%)
# Gaps: 140/913 (15.3%)
# Score: 1833.0
#
#
#=======================================
BSNT_03818___ 1 ATGAAAAAGCTGTACGGGGTTATCGGAAATCCGATTGGCCATTCTATGTC 50
.|||||....|.|||||.||.|||||.||.||..||||||||||.|||||
BPUM_2300___a 1 TTGAAACCATTATACGGAGTAATCGGTAACCCTGTTGGCCATTCAATGTC 50
BSNT_03818___ 51 ACCTGATATTCATAACGCATCATTGAAAGA-CCTCGGGCTTGACGGACAT 99
.||.|||||||||||.|||.||||.||.|| .|| ||..||||.||||||
BPUM_2300___a 51 TCCGGATATTCATAATGCAGCATTAAAGGATGCT-GGAATTGATGGACAT 99
BSNT_03818___ 100 TATCA-TGCCTTCAAGGTAGAAGAGGATGATCTGGAGGATGCGGTAAAAG 148
||||| .||.||||| ||||||.|.|||||.|||.|.||||||.|.||.|
BPUM_2300___a 100 TATCACGGCTTTCAA-GTAGAAAATGATGACCTGAAAGATGCGATTAACG 148
BSNT_03818___ 149 GAATAAGAGCTCTAGGCGTACA-AGGAATCAATGTGACTGTTCCGCACAA 197
|.||.|.|||..|||| |..|| .||..|.||.||.||||||||||||||
BPUM_2300___a 149 GTATGAAAGCCTTAGG-GATCAGCGGCTTTAACGTCACTGTTCCGCACAA 197
BSNT_03818___ 198 GGTTTCCATTATGGATTATCTGGATCATATTGATGAGAGTGCAAAAGTGA 247
|||...|||.|||.|.||||||||..|.||||||| .||.|..|||
BPUM_2300___a 198 GGTAGACATCATGCAGTATCTGGACAAAATTGATG-----TCACAGCTGA 242
BSNT_03818___ 248 TCG-----GTGCCGTAAACACGGT-----CAGAAGAGAGGGAGATAAGCT 287
.|| |||||||.||.||||| ..||||| ||.|.|.||
BPUM_2300___a 243 ACGCCTGCGTGCCGTCAATACGGTGCGGCTTGAAGA-----AGGTCAACT 287
BSNT_03818___ 288 TGTCGGATACAATACCGATGGGGAAGGCTTCGTGAAGTCATTAAT----- 332
.||.||.|||||.||.|||||.||.|||||..| |||||.||
BPUM_2300___a 288 CGTTGGGTACAACACAGATGGAGAGGGCTTTCT----TCATTCATTGCTC 333
BSNT_03818___ 333 GAAGGTATTAGACAAGCCCATCTCTGAACTGTCAT---TCTTAATGATCG 379
||| |..||.||..||||..|..|.||.||.|||| ||||| ||.|
BPUM_2300___a 334 GAA-GCCTTGGATCAGCCATTAACAGAGCTTTCATTTCTCTTA---ATTG 379
BSNT_03818___ 380 GCGCTGGCGGAGCGGCGAGAGCCATTTTTACAACAATTGTCCGA-AATAC 428
|.|||||.||||||||.||||||||||.|||.|||||.| |.|| .||.|
BPUM_2300___a 380 GTGCTGGAGGAGCGGCAAGAGCCATTTATACGACAATCG-CTGACTATGC 428
BSNT_03818___ 429 CCCGAAAAAATTTGACATTTGCAACCGGACGTTAGAAAAAGCAAAGCGGC 478
.|||||||..|||||.|||..||||||.||..|.|||||||| .|.|||
BPUM_2300___a 429 ACCGAAAAGCTTTGATATTACCAACCGCACCATTGAAAAAGC--TGAGGC 476
BSNT_03818___ 479 T-----------TACAGAAG------------CTACTCCCTCGTTTCACA 505
| |.||||.| |||.|.||
BPUM_2300___a 477 TTTAATTAAAAGTGCAGATGGGAACATCACTTCTAGTGCC---------- 516
BSNT_03818___ 506 ATAAAGAAGTATTAAGCATAAAAGA-AGCAGAAGAACGTCTTGAGCAGTA 554
|||| |||.||||| .||.|||||.|..||||.|.|.||
BPUM_2300___a 517 ----------ATTA--CATTAAAGACGGCGGAAGAGCAGCTTGGGGAATA 554
BSNT_03818___ 555 TGATGTTATCATCCATACAACGTCTGTGGGCATGTATCCGAACGTGGATG 604
||||||.|||||||||||.||.||..|.||.|||.|.|||||.||.||.|
BPUM_2300___a 555 TGATGTCATCATCCATACGACCTCAATTGGTATGCACCCGAATGTTGAAG 604
BSNT_03818___ 605 ATGTGCCGCTTTCATTACAGCGTGC---CGC-----GAGCAGTGCCGTCG 646
|....|||.||||.||| || ||| .|.|| ||.||.|
BPUM_2300___a 605 AAACCCCGATTTCTTTA------GCAAACGCAAAAAAAACA--GCGGTTG 646
BSNT_03818___ 647 TATGTGATATCGTGTATAATCCAATACAGACGGCCCTTTTAAAG------ 690
|.||||||||.|||||||||||||||.|.|| ||||
BPUM_2300___a 647 TTTGTGATATTGTGTATAATCCAATAGAAAC---------AAAGCTGCTC 687
BSNT_03818___ 691 ---GAAGCAAGCCAAAA-----AGGCTTGAAAACACTCGACGGTGTGGGC 732
||||| |||| |||.||.||||||.|.||.|||||.|||
BPUM_2300___a 688 AGAGAAGC-AGCC----GGGTTAGGTTTAAAAACAGTAGATGGTGTCGGC 732
BSNT_03818___ 733 ATGTTTGTTGAACAGGCAGC-ATTGTCTTTCCAATTGTGGACTGGACAAG 781
||||||||||.|||.||||| |..|.|||| .||.|||||||.|| ||..
BPUM_2300___a 733 ATGTTTGTTGGACAAGCAGCTAGAGCCTTT-GAACTGTGGACAGG-CATC 780
BSNT_03818___ 782 A-GCCTGATATTGAAAAAATGAGATCCATTGTAATAGGAAAATTAGGAGG 830
| ||||||..|...||||||||..||.|||||.|||...|||||||||||
BPUM_2300___a 781 ACGCCTGACGTAAGAAAAATGAAGTCAATTGTGATACAGAAATTAGGAGG 830
BSNT_03818___ 831 AACAGAATGTTAA 843
||||..|||||||
BPUM_2300___a 831 AACACCATGTTAA 843
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