Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03812 and BPUM_2294
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:22
# Commandline: needle
# -asequence dna-align/BSNT_03812___comER.1.24716.seq
# -bsequence dna-align/BPUM_2294___comER.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03812___comER-BPUM_2294___comER.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03812___comER-BPUM_2294___comER.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03812___comER
# 2: BPUM_2294___comER
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 934
# Identity: 570/934 (61.0%)
# Similarity: 570/934 (61.0%)
# Gaps: 197/934 (21.1%)
# Score: 1677.5
#
#
#=======================================
BSNT_03812___ 1 TTGAAGATAGGCTTTATCGGCACAGGAAATATGGGTACGATCCTTATCGA 50
|||||.||.||..|.|||||.||||||||.||||||||.||.||||..||
BPUM_2294___c 1 TTGAATATCGGGATAATCGGTACAGGAAACATGGGTACCATACTTACTGA 50
BSNT_03812___ 51 ATCATTTATTGAATCAAAAGCAGCCGATCCCTCAAACATGACAATCACAA 100
..||||||||||||||||.||||.|.||||||||..|||.||.|||||||
BPUM_2294___c 51 GGCATTTATTGAATCAAAGGCAGTCAATCCCTCATCCATCACCATCACAA 100
BSNT_03812___ 101 ACCGCACAATTGAAAAAGCGTTGCACATAAAA---AACCGCTACAACAGC 147
||||.||.||.|||||||||||..|.|||||| ||||.| |.|.|||
BPUM_2294___c 101 ACCGGACCATAGAAAAAGCGTTCAATATAAAAAAGAACCAC--CCAGAGC 148
BSNT_03812___ 148 ATAAACGTTACCGAAA---------------GTCTCGA--AAAGCTCGTT 180
.|.|| |||| ||||| ||||||| ||||.| ||
BPUM_2294___c 149 TTGAA-GTTA-CGAAACAGCTTACAGGAGCTGTCTCGAATAAAGAT--TT 194
BSNT_03812___ 181 TCTGAAAACGAGATGATTTTTATTTGTGTTAAGCCGCTTGATATATATCC 230
| ||.|||.|||||||.||.|||||||||||.|||||
BPUM_2294___c 195 T--------------ATCTTTGTTTGTGTCAAACCGCTTGATATTTATCC 230
BSNT_03812___ 231 ---TTTACTGGCAAGAGCGTTA--CCTTATTTAAGAAAAGATCA---TAT 272
|||| .|||||| |.| |||..|||||.|.|..|.|| .||
BPUM_2294___c 231 ACTTTTA----AAAGAGC-TGAGCCCTCTTTTAACAGAGCACCAAACCAT 275
BSNT_03812___ 273 TCTCATCTCAATTACAAGCCCCGTTCAAACCGAACAGCTCGAACA--ATA 320
|.||||| ||||||||.||.|||||..|.||||||.| .|| |||
BPUM_2294___c 276 TGTCATC---ATTACAAGTCCGGTTCATCCTGAACAGAT---TCAGGATA 319
BSNT_03812___ 321 T-GTGCCGTGTCAAGTGGCTCGAGTGATCCCAAGTATTACGAACAGAGCG 369
| ||.||.||||||...|||.|..||||.|||||.|||||||||.|.||.
BPUM_2294___c 320 TCGTTCCTTGTCAAACAGCTAGGCTGATTCCAAGCATTACGAACCGCGCT 369
BSNT_03812___ 370 CTGGCAGGTGTTTCTCTCGTCACTTTCGGCACAAGCTGCGGCGAATC--- 416
.|..|||||| ||||||||| .||..|.||| |||
BPUM_2294___c 370 TTATCAGGTG-------CGTCACTTT-----TAACATTCGG---ATCGTC 404
BSNT_03812___ 417 -TGCA-----AAAACGAAAA----------TCAATGAGCTGATGCAGCAT 450
|||| ..|||||||| .||||.|||| |.|.|||
BPUM_2294___c 405 ATGCAGTGTCGCAACGAAAACAGCGTTAAGACAATTAGCT--TCCTGCA- 451
BSNT_03812___ 451 ATCTCTCATCCGCTGCAAATTGAAAGTGACATC--------ACCAGGGTT 492
|.|||.|..|| |||||||.| |||| ||.||.|..
BPUM_2294___c 452 ---TTTCAACACCT----ATTGAAATT--CATCATTCGATTACAAGAGCG 492
BSNT_03812___ 493 GCATCAGACATCGTAAGCTGCGGCCCCGCTTTTATGAGCTATCTGATTCA 542
||.|||||.|||||.||||||||.||.||.|||||.||||..||..||||
BPUM_2294___c 493 GCGTCAGATATCGTCAGCTGCGGTCCTGCCTTTATCAGCTTCCTCGTTCA 542
BSNT_03812___ 543 GCGGTTTATAGATGCAGCTGTTTCG--GAAACATCAGTGTCTAAACAGGA 590
|....|.||.||.|||||.| ||| ||||||....|.||||||.|.||
BPUM_2294___c 543 GAAAATGATTGAAGCAGCCG--TCGAAGAAACAGATATTTCTAAAGAAGA 590
BSNT_03812___ 591 CGCGA-----TTTTGATGTGTAAGGAAATGCTTGTCGGAATGGGAAAACT 635
.||.| ||.|.| .|.||.|||||.||.||..|.|| |.
BPUM_2294___c 591 AGCCACCACCTTATCA-----GAAGATATGCTAGTAGGGCTTGG----CC 631
BSNT_03812___ 636 GTTAG-----AAACCGAATTGTATACCCTGCCTGCATTACAGGAAAAGGT 680
|||.| |||..| |.|||||||.||.||..||.|.||.||.||.||
BPUM_2294___c 632 GTTTGATTGAAAAAAG-ACTGTATACTCTTCCGACACTGCAAGACAAAGT 680
BSNT_03812___ 681 TTGCGTTAAAGGCGGTGTAACAGGAGAAGGCATTAAAGCGCTGGAAAGC- 729
.||.||.||||||||.||.||.||.|||||.||||||||.||.| ||||
BPUM_2294___c 681 CTGTGTAAAAGGCGGCGTCACGGGTGAAGGGATTAAAGCACTTG-AAGCA 729
BSNT_03812___ 730 GGTGTGCAGGATATGTTTCACCGGGTATTTCAAAATACTCAT-------- 771
|||||.||.|||||||||||.||..|.||||||||.||.|||
BPUM_2294___c 730 GGTGTTCAAGATATGTTTCATCGCCTCTTTCAAAACACCCATGAAAAATT 779
BSNT_03812___ 772 --ATGAAGTAC--GAGGAGGATATTTCCGCAGTGAAAAA-----GCAGTT 812
||||||..| ||.|.|| ||.||| ||.|| ||
BPUM_2294___c 780 TGATGAAGATCTTGAAGCGG----TTGCGC----AACAATACCCGC---- 817
BSNT_03812___ 813 TCATGTGTAG------------------------ 822
||.|||| |
BPUM_2294___c 818 -CAAGTGT-GTTTACTGATGATCGCAGAAATTAA 849
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