Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03811 and BPUM_2293
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:22
# Commandline: needle
# -asequence dna-align/BSNT_03811___comEA.1.24716.seq
# -bsequence dna-align/BPUM_2293___comEA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03811___comEA-BPUM_2293___comEA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03811___comEA-BPUM_2293___comEA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03811___comEA
# 2: BPUM_2293___comEA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 744
# Identity: 385/744 (51.7%)
# Similarity: 385/744 (51.7%)
# Gaps: 240/744 (32.3%)
# Score: 799.5
#
#
#=======================================
BSNT_03811___ 1 ATGAATTGGTTGAATCAGCA-TAAGAAA--GCAATTATTTTAGCGGCTTC 47
.||||..|..|.|.|| || |.||||| .||.|..||.||.|||
BPUM_2293___c 1 GTGAAGCGACTCATTC--CATTGAGAAAATACAGTCTTTATATCGG---- 44
BSNT_03811___ 48 TGCGGCTG---TTTTCACAGCGATTATGAT--CTTTC-------TGGCCA 85
.|||| ||.|.|..|||||.||.|| ||||| |||
BPUM_2293___c 45 ---AGCTGGGCTTATAAGCGCGATCATCATCACTTTCTTCCTTTTGG--- 88
BSNT_03811___ 86 CAGGGAAAAATAA------------AGAGCC------GGTGAAG------ 111
|||| |||||| |||||| ..|||||
BPUM_2293___c 89 CAGG---AAATAAGGGGAGCACTGGAGAGCCAAGTGTATTGAAGGGCGAT 135
BSNT_03811___ 112 CAAGCTGTACCAACA--------GAGACAGAAAATACAGTGGTAAAGCAG 153
|||| ||.|||| .||| |||.||.||| |.|||||
BPUM_2293___c 136 CAAG----ACAAACATGTCACATTAGA-AGACAAAACA---GAAAAGC-- 175
BSNT_03811___ 154 GAAGCAAACAACGACGAGTCAAACGAAACAATTGTGATAGACATCAAAGG 203
|..|.||.||| |||..| .|.|||.|..|.||..|||||||
BPUM_2293___c 176 ----CCGATAATGAC---TCATCC---TCCATTTTTGTGGAGGTCAAAGG 215
BSNT_03811___ 204 TGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACAGGGGACAGAGT-- 251
.|||||..|..|.||.||.|||||| || ||
BPUM_2293___c 216 AGCTGTGAAAAAGCCGGGTGTTTAT----------------AC---GTTT 246
BSNT_03811___ 252 --ATCTCAGGCAATTG----AGAA-----------AGCGGGCGG---GAC 281
||||.|.|||..|| |||| |||.||.|| .||
BPUM_2293___c 247 CAATCTGATGCACGTGTAGAAGAAGCGATTCGAAGAGCAGGAGGTTTTAC 296
BSNT_03811___ 282 CAGTGAACAAGCAGAC---------------GAAGC-GCAAGTAAATTTG 315
.||| .|||||||| .|||| ||| |||||
BPUM_2293___c 297 TAGT---AAAGCAGACACAATTGAAATTAATCAAGCAGCA---AAATT-- 338
BSNT_03811___ 316 GCGGAGATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGA 365
.|.|||| ||.|.| .||.|.||..|||.|||..|||||||
BPUM_2293___c 339 -AGAAGAT-----AGTATG-----ATGATTTATGTCCGGAAGCAGGGAGA 377
BSNT_03811___ 366 GGAAATAGCAGTG-------------CAGCAAGGTGGCGGAGGGTCAGTC 402
|||||.| |||| |||| ||.||.|.||..||
BPUM_2293___c 378 ------AGCAGAGAGGCAGACACAAACAGC-AGGT-GCAGACGCTCCATC 419
BSNT_03811___ 403 CAAAGCGATG----GAGGGAAGGGAGCGCTG-----GTGAATATCA---- 439
|.|..||| |||..||.| || |||| ||||
BPUM_2293___c 420 --AGGTAATGAAAAGAGTCAAAG------TGTCAACGTGA--ATCAGGCT 459
BSNT_03811___ 440 -ATACAGCAACCTTAGAGGAGTTACAAGGCATCTCA-GGGGTGGGGCCAT 487
||.||||| ||.||.|||..||| |.| ||..|.||||||.
BPUM_2293___c 460 GATGCAGCA---------GAATTGCAAACCAT-TAATGGAATAGGGCCAG 499
BSNT_03811___ 488 CCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGG-GCGTTTCCA 536
|.|||||.|||||.||.|||.|.|||.|.||.|||.|||| |..||||
BPUM_2293___c 500 CTAAAGCAGAAGCCATCATTACGTACAGAGAGGAACACGGAGAATTTC-- 547
BSNT_03811___ 537 AAC-AATTGAAGATATCAC-TAAGGTTTCAGGAATAGGTGAAAAG-TCAT 583
||| |||||||||| |.|| .||..|||||||..|.||.||.||| .|||
BPUM_2293___c 548 AACAAATTGAAGAT-TTACGGAACATTTCAGGTTTTGGGGAGAAGACCAT 596
BSNT_03811___ 584 T-------TGAGAAAATAAAGTCTT--CCATTACAGTAAAGTGA 618
| ||| |||||.|| || ||.||| ||||.
BPUM_2293___c 597 TGAACGGCTGA-AAAATGAA---TTGACCGTTA-AGTAG----- 630
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