Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03811 and BPUM_2293

See Amino acid alignment / Visit BSNT_03811 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:22
# Commandline: needle
#    -asequence dna-align/BSNT_03811___comEA.1.24716.seq
#    -bsequence dna-align/BPUM_2293___comEA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03811___comEA-BPUM_2293___comEA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03811___comEA-BPUM_2293___comEA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03811___comEA
# 2: BPUM_2293___comEA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 744
# Identity:     385/744 (51.7%)
# Similarity:   385/744 (51.7%)
# Gaps:         240/744 (32.3%)
# Score: 799.5
# 
#
#=======================================

BSNT_03811___      1 ATGAATTGGTTGAATCAGCA-TAAGAAA--GCAATTATTTTAGCGGCTTC     47
                     .||||..|..|.|.||  || |.|||||  .||.|..||.||.|||    
BPUM_2293___c      1 GTGAAGCGACTCATTC--CATTGAGAAAATACAGTCTTTATATCGG----     44

BSNT_03811___     48 TGCGGCTG---TTTTCACAGCGATTATGAT--CTTTC-------TGGCCA     85
                        .||||   ||.|.|..|||||.||.||  |||||       |||   
BPUM_2293___c     45 ---AGCTGGGCTTATAAGCGCGATCATCATCACTTTCTTCCTTTTGG---     88

BSNT_03811___     86 CAGGGAAAAATAA------------AGAGCC------GGTGAAG------    111
                     ||||   ||||||            ||||||      ..|||||      
BPUM_2293___c     89 CAGG---AAATAAGGGGAGCACTGGAGAGCCAAGTGTATTGAAGGGCGAT    135

BSNT_03811___    112 CAAGCTGTACCAACA--------GAGACAGAAAATACAGTGGTAAAGCAG    153
                     ||||    ||.||||        .||| |||.||.|||   |.|||||  
BPUM_2293___c    136 CAAG----ACAAACATGTCACATTAGA-AGACAAAACA---GAAAAGC--    175

BSNT_03811___    154 GAAGCAAACAACGACGAGTCAAACGAAACAATTGTGATAGACATCAAAGG    203
                         |..|.||.|||   |||..|   .|.|||.|..|.||..|||||||
BPUM_2293___c    176 ----CCGATAATGAC---TCATCC---TCCATTTTTGTGGAGGTCAAAGG    215

BSNT_03811___    204 TGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACAGGGGACAGAGT--    251
                     .|||||..|..|.||.||.||||||                ||   ||  
BPUM_2293___c    216 AGCTGTGAAAAAGCCGGGTGTTTAT----------------AC---GTTT    246

BSNT_03811___    252 --ATCTCAGGCAATTG----AGAA-----------AGCGGGCGG---GAC    281
                       ||||.|.|||..||    ||||           |||.||.||   .||
BPUM_2293___c    247 CAATCTGATGCACGTGTAGAAGAAGCGATTCGAAGAGCAGGAGGTTTTAC    296

BSNT_03811___    282 CAGTGAACAAGCAGAC---------------GAAGC-GCAAGTAAATTTG    315
                     .|||   .||||||||               .|||| |||   |||||  
BPUM_2293___c    297 TAGT---AAAGCAGACACAATTGAAATTAATCAAGCAGCA---AAATT--    338

BSNT_03811___    316 GCGGAGATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGA    365
                      .|.||||     ||.|.|     .||.|.||..|||.|||..|||||||
BPUM_2293___c    339 -AGAAGAT-----AGTATG-----ATGATTTATGTCCGGAAGCAGGGAGA    377

BSNT_03811___    366 GGAAATAGCAGTG-------------CAGCAAGGTGGCGGAGGGTCAGTC    402
                           |||||.|             |||| |||| ||.||.|.||..||
BPUM_2293___c    378 ------AGCAGAGAGGCAGACACAAACAGC-AGGT-GCAGACGCTCCATC    419

BSNT_03811___    403 CAAAGCGATG----GAGGGAAGGGAGCGCTG-----GTGAATATCA----    439
                       |.|..|||    |||..||.|      ||     ||||  ||||    
BPUM_2293___c    420 --AGGTAATGAAAAGAGTCAAAG------TGTCAACGTGA--ATCAGGCT    459

BSNT_03811___    440 -ATACAGCAACCTTAGAGGAGTTACAAGGCATCTCA-GGGGTGGGGCCAT    487
                      ||.|||||         ||.||.|||..||| |.| ||..|.||||||.
BPUM_2293___c    460 GATGCAGCA---------GAATTGCAAACCAT-TAATGGAATAGGGCCAG    499

BSNT_03811___    488 CCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGG-GCGTTTCCA    536
                     |.|||||.|||||.||.|||.|.|||.|.||.|||.|||| |..||||  
BPUM_2293___c    500 CTAAAGCAGAAGCCATCATTACGTACAGAGAGGAACACGGAGAATTTC--    547

BSNT_03811___    537 AAC-AATTGAAGATATCAC-TAAGGTTTCAGGAATAGGTGAAAAG-TCAT    583
                     ||| |||||||||| |.|| .||..|||||||..|.||.||.||| .|||
BPUM_2293___c    548 AACAAATTGAAGAT-TTACGGAACATTTCAGGTTTTGGGGAGAAGACCAT    596

BSNT_03811___    584 T-------TGAGAAAATAAAGTCTT--CCATTACAGTAAAGTGA    618
                     |       ||| |||||.||   ||  ||.||| ||||.     
BPUM_2293___c    597 TGAACGGCTGA-AAAATGAA---TTGACCGTTA-AGTAG-----    630


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.