Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03804 and BPUM_2289
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:21
# Commandline: needle
# -asequence dna-align/BSNT_03804___holA.1.24716.seq
# -bsequence dna-align/BPUM_2289___holA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03804___holA-BPUM_2289___holA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03804___holA-BPUM_2289___holA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03804___holA
# 2: BPUM_2289___holA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1089
# Identity: 758/1089 (69.6%)
# Similarity: 758/1089 (69.6%)
# Gaps: 114/1089 (10.5%)
# Score: 2551.5
#
#
#=======================================
BSNT_03804___ 1 ATGGTATTTGATGTGTGGAAAAGCCTGAAAAAAGGAGATGTCCATCCAGT 50
|||||.|||||.||.|||||.|...|.||||.|||.|||.|||||||.||
BPUM_2289___h 1 ATGGTCTTTGAGGTTTGGAACAATTTAAAAAGAGGGGATATCCATCCCGT 50
BSNT_03804___ 51 TTATTGTTTATACGGAAAAGAGACATATCTGCTGCAAGAAACCGTCAGC- 99
||||||.|||||.||||||||.||.|||.|.|||||||||||.| ||||
BPUM_2289___h 51 TTATTGCTTATATGGAAAAGAAACGTATTTACTGCAAGAAACAG-CAGCT 99
BSNT_03804___ 100 AGGATCAGACAGACGGTCGTTGATCAGGAGACAAAGGATTTCAATCTA-T 148
|...|.|||||..|.||.||.|||.||||||||||||||||.||| || |
BPUM_2289___h 100 AAATTAAGACAAGCTGTAGTAGATGAGGAGACAAAGGATTTTAAT-TACT 148
BSNT_03804___ 149 CCGTTTTTGATCTGGAAGAGGACCCGCTGGATCAAGC---GATTGCAGAT 195
|||||||||||.||||.||||..||||||||.||.|| ||| ||||
BPUM_2289___h 149 CCGTTTTTGATATGGAGGAGGTACCGCTGGAACAGGCTGTGAT---AGAT 195
BSNT_03804___ 196 GCTGAAACGTTTCCGTTTATGGGGGAGCGGCGTCTTGTCATTGTG---AA 242
||.|||||.||||||||.|||||.||..|||||| ||.||||| ||
BPUM_2289___h 196 GCAGAAACCTTTCCGTTCATGGGAGAAAGGCGTC---TCGTTGTGATCAA 242
BSNT_03804___ 243 AAATCCATATTTTTTAACAGGTGAAAAGAAAAAAGAAAAAATTGAGCACA 292
.||.||.||||||.|.||||..|||||||||||.||.||.||.|||||
BPUM_2289___h 243 GAACCCTTATTTTCTTACAGCGGAAAAGAAAAAGGAGAAGATCGAGCA-- 290
BSNT_03804___ 293 ACGTCAGTGCGCTT---------GAATCATATATACAATCACCTGCGCCT 333
||.|||| |||.|.|||.||.||...||.||||||
BPUM_2289___h 291 -------TGAGCTTTCTCTGTTAGAAGCTTATTTAGAAAAGCCGGCGCCT 333
BSNT_03804___ 334 TACA-CAGTCTTTGTCCTGCTTGCTCCGTATGAAAAGCTTGATGAGCGAA 382
||.| ||.|| |||||.|..|.||.||.|||||||||||.|||||.||.|
BPUM_2289___h 334 TATACCATTC-TTGTCTTATTAGCACCATATGAAAAGCTGGATGAACGGA 382
BSNT_03804___ 383 AAAAGCTGACGAAAGCGTTAAAGAAGCACGCGTTTATGATGGAGGCGAAG 432
|.||..|.||.|||..|.||||.|||.|.|||..||||.|.|||||.||.
BPUM_2289___h 383 AGAAAATCACTAAATTGCTAAAAAAGAAAGCGGCTATGGTTGAGGCAAAA 432
BSNT_03804___ 433 GAATTAAATGCAAAGGAAACGACAGACTTTACTGTCAACCTTGCAAAAAC 482
||.|||||..||||.|||||.||.||.||.||..|.|..||.|..|||||
BPUM_2289___h 433 GAGTTAAACCCAAAAGAAACAACGGATTTCACCATTACACTGGTGAAAAC 482
BSNT_03804___ 483 AGAGCAGAAAA--CAATCGGCACGGAAGCGGCGGAGCATTTGGTTCTGCT 530
||| ||.||| |.||...|.|.||||||||.|||||..|.||..|||
BPUM_2289___h 483 AGA--AGGAAAGTCGATTTTCTCTGAAGCGGCTGAGCAACTTGTCATGC- 529
BSNT_03804___ 531 TGTGAACGGT---CATCTGTCATCGATTTTTCAGGAGATTCA-AAAGCTC 576
|||| |||| ..|||.||.||..|.|||||.||| .||| .|||||.
BPUM_2289___h 530 TGTG--CGGTGGAAGTCTATCTTCCTTGTTTCAAGAG-GTCAGGAAGCTG 576
BSNT_03804___ 577 TGCACGTTTATTGGAGATCGTGAAGAAATTACGCTGGAT-----GATGTA 621
.|.||.|.|||||||||.||.|||||||| ||.|| |||||.
BPUM_2289___h 577 AGTACATATATTGGAGAGCGAGAAGAAAT-----TGAATTAGCGGATGTC 621
BSNT_03804___ 622 AA--AATGCTTGTTGCTAGAAGCCTTGAACAAAATATTTTTGAGCTGATC 669
|| || ||.|||||.||||||.|.||.||.|||||||||||..|.||.
BPUM_2289___h 622 AATCAA--CTCGTTGCAAGAAGCTTAGAGCAGAATATTTTTGAATTAATT 669
BSNT_03804___ 670 AATAAAATCGTCAACCGAAAACGAACAGAGAGTC-TGCAAATTTTTTATG 718
||..||||.||||||.||...||..|..| ||.| ||||.||.|||||||
BPUM_2289___h 670 AACCAAATTGTCAACAGACGCCGCTCTCA-AGCCATGCAGATGTTTTATG 718
BSNT_03804___ 719 ATTTGCTAAAACAAAATGAAGAACCGATCAAAATTATGGCGCTTATTTCG 768
|.|||||.|||||||||||.|||||.||.|||||..||||.||.||.||.
BPUM_2289___h 719 ACTTGCTGAAACAAAATGAGGAACCCATTAAAATATTGGCACTCATATCT 768
BSNT_03804___ 769 AATCAGTTCCGGCTGATTCTGCAGACGAAGTACTTCGCGGAACAGGGATA 818
|.|||.||.||..|||||.|||||||||||||.|||||..|.||.|||||
BPUM_2289___h 769 ACTCAATTTCGTTTGATTTTGCAGACGAAGTATTTCGCTCAGCAAGGATA 818
BSNT_03804___ 819 CGGACAAAAACAAATCGCTTCTAATCTAAAAGTTCACCCATTTCGGGTAA 868
.||||||||||||||.|||||.|||||||||||.||||||||.||.||.|
BPUM_2289___h 819 TGGACAAAAACAAATTGCTTCAAATCTAAAAGTCCACCCATTCCGCGTTA 868
BSNT_03804___ 869 AGCTGGCGATGGATCAAGCAAGGCTTTTTTCAGAGGAGGAGCTCCGTTTA 918
|.||.||.||||||||.|||||.||.||||||||.||.|||||| |
BPUM_2289___h 869 AACTTGCTATGGATCAGGCAAGACTGTTTTCAGAAGAAGAGCTC-----A 913
BSNT_03804___ 919 -----ATTATTGAACAGCTTGC--CGTCATGGACTATGAGATGAAAACCG 961
|||.|..||.||||..| || ||.||.|||||.||||||||||
BPUM_2289___h 914 AGCAGATTGTCAAAGAGCTATCAACG--ATCGATTATGAAATGAAAACCG 961
BSNT_03804___ 962 GGAAAAAGGACAAGCAGCTCCTGCTCGAACTGTTCCTTTTACAGCTGTTA 1011
|.|||||||||||||||||..||||.|||.||.|.|| |||
BPUM_2289___h 962 GTAAAAAGGACAAGCAGCTATTGCTAGAATTGATTCT------GCT---- 1001
BSNT_03804___ 1012 AAAAGAAATGAAAAAAACGATC-CCCATTA-----TTGA 1044
|| ||.|||| ||||
BPUM_2289___h 1002 --------------------TCGCCTATTAGGCGCTTGA 1020
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