Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03804 and BPUM_2289

See Amino acid alignment / Visit BSNT_03804 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:21
# Commandline: needle
#    -asequence dna-align/BSNT_03804___holA.1.24716.seq
#    -bsequence dna-align/BPUM_2289___holA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03804___holA-BPUM_2289___holA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03804___holA-BPUM_2289___holA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03804___holA
# 2: BPUM_2289___holA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1089
# Identity:     758/1089 (69.6%)
# Similarity:   758/1089 (69.6%)
# Gaps:         114/1089 (10.5%)
# Score: 2551.5
# 
#
#=======================================

BSNT_03804___      1 ATGGTATTTGATGTGTGGAAAAGCCTGAAAAAAGGAGATGTCCATCCAGT     50
                     |||||.|||||.||.|||||.|...|.||||.|||.|||.|||||||.||
BPUM_2289___h      1 ATGGTCTTTGAGGTTTGGAACAATTTAAAAAGAGGGGATATCCATCCCGT     50

BSNT_03804___     51 TTATTGTTTATACGGAAAAGAGACATATCTGCTGCAAGAAACCGTCAGC-     99
                     ||||||.|||||.||||||||.||.|||.|.|||||||||||.| |||| 
BPUM_2289___h     51 TTATTGCTTATATGGAAAAGAAACGTATTTACTGCAAGAAACAG-CAGCT     99

BSNT_03804___    100 AGGATCAGACAGACGGTCGTTGATCAGGAGACAAAGGATTTCAATCTA-T    148
                     |...|.|||||..|.||.||.|||.||||||||||||||||.||| || |
BPUM_2289___h    100 AAATTAAGACAAGCTGTAGTAGATGAGGAGACAAAGGATTTTAAT-TACT    148

BSNT_03804___    149 CCGTTTTTGATCTGGAAGAGGACCCGCTGGATCAAGC---GATTGCAGAT    195
                     |||||||||||.||||.||||..||||||||.||.||   |||   ||||
BPUM_2289___h    149 CCGTTTTTGATATGGAGGAGGTACCGCTGGAACAGGCTGTGAT---AGAT    195

BSNT_03804___    196 GCTGAAACGTTTCCGTTTATGGGGGAGCGGCGTCTTGTCATTGTG---AA    242
                     ||.|||||.||||||||.|||||.||..||||||   ||.|||||   ||
BPUM_2289___h    196 GCAGAAACCTTTCCGTTCATGGGAGAAAGGCGTC---TCGTTGTGATCAA    242

BSNT_03804___    243 AAATCCATATTTTTTAACAGGTGAAAAGAAAAAAGAAAAAATTGAGCACA    292
                     .||.||.||||||.|.||||..|||||||||||.||.||.||.|||||  
BPUM_2289___h    243 GAACCCTTATTTTCTTACAGCGGAAAAGAAAAAGGAGAAGATCGAGCA--    290

BSNT_03804___    293 ACGTCAGTGCGCTT---------GAATCATATATACAATCACCTGCGCCT    333
                            ||.||||         |||.|.|||.||.||...||.||||||
BPUM_2289___h    291 -------TGAGCTTTCTCTGTTAGAAGCTTATTTAGAAAAGCCGGCGCCT    333

BSNT_03804___    334 TACA-CAGTCTTTGTCCTGCTTGCTCCGTATGAAAAGCTTGATGAGCGAA    382
                     ||.| ||.|| |||||.|..|.||.||.|||||||||||.|||||.||.|
BPUM_2289___h    334 TATACCATTC-TTGTCTTATTAGCACCATATGAAAAGCTGGATGAACGGA    382

BSNT_03804___    383 AAAAGCTGACGAAAGCGTTAAAGAAGCACGCGTTTATGATGGAGGCGAAG    432
                     |.||..|.||.|||..|.||||.|||.|.|||..||||.|.|||||.||.
BPUM_2289___h    383 AGAAAATCACTAAATTGCTAAAAAAGAAAGCGGCTATGGTTGAGGCAAAA    432

BSNT_03804___    433 GAATTAAATGCAAAGGAAACGACAGACTTTACTGTCAACCTTGCAAAAAC    482
                     ||.|||||..||||.|||||.||.||.||.||..|.|..||.|..|||||
BPUM_2289___h    433 GAGTTAAACCCAAAAGAAACAACGGATTTCACCATTACACTGGTGAAAAC    482

BSNT_03804___    483 AGAGCAGAAAA--CAATCGGCACGGAAGCGGCGGAGCATTTGGTTCTGCT    530
                     |||  ||.|||  |.||...|.|.||||||||.|||||..|.||..||| 
BPUM_2289___h    483 AGA--AGGAAAGTCGATTTTCTCTGAAGCGGCTGAGCAACTTGTCATGC-    529

BSNT_03804___    531 TGTGAACGGT---CATCTGTCATCGATTTTTCAGGAGATTCA-AAAGCTC    576
                     ||||  ||||   ..|||.||.||..|.|||||.||| .||| .|||||.
BPUM_2289___h    530 TGTG--CGGTGGAAGTCTATCTTCCTTGTTTCAAGAG-GTCAGGAAGCTG    576

BSNT_03804___    577 TGCACGTTTATTGGAGATCGTGAAGAAATTACGCTGGAT-----GATGTA    621
                     .|.||.|.|||||||||.||.||||||||     ||.||     |||||.
BPUM_2289___h    577 AGTACATATATTGGAGAGCGAGAAGAAAT-----TGAATTAGCGGATGTC    621

BSNT_03804___    622 AA--AATGCTTGTTGCTAGAAGCCTTGAACAAAATATTTTTGAGCTGATC    669
                     ||  ||  ||.|||||.||||||.|.||.||.|||||||||||..|.||.
BPUM_2289___h    622 AATCAA--CTCGTTGCAAGAAGCTTAGAGCAGAATATTTTTGAATTAATT    669

BSNT_03804___    670 AATAAAATCGTCAACCGAAAACGAACAGAGAGTC-TGCAAATTTTTTATG    718
                     ||..||||.||||||.||...||..|..| ||.| ||||.||.|||||||
BPUM_2289___h    670 AACCAAATTGTCAACAGACGCCGCTCTCA-AGCCATGCAGATGTTTTATG    718

BSNT_03804___    719 ATTTGCTAAAACAAAATGAAGAACCGATCAAAATTATGGCGCTTATTTCG    768
                     |.|||||.|||||||||||.|||||.||.|||||..||||.||.||.||.
BPUM_2289___h    719 ACTTGCTGAAACAAAATGAGGAACCCATTAAAATATTGGCACTCATATCT    768

BSNT_03804___    769 AATCAGTTCCGGCTGATTCTGCAGACGAAGTACTTCGCGGAACAGGGATA    818
                     |.|||.||.||..|||||.|||||||||||||.|||||..|.||.|||||
BPUM_2289___h    769 ACTCAATTTCGTTTGATTTTGCAGACGAAGTATTTCGCTCAGCAAGGATA    818

BSNT_03804___    819 CGGACAAAAACAAATCGCTTCTAATCTAAAAGTTCACCCATTTCGGGTAA    868
                     .||||||||||||||.|||||.|||||||||||.||||||||.||.||.|
BPUM_2289___h    819 TGGACAAAAACAAATTGCTTCAAATCTAAAAGTCCACCCATTCCGCGTTA    868

BSNT_03804___    869 AGCTGGCGATGGATCAAGCAAGGCTTTTTTCAGAGGAGGAGCTCCGTTTA    918
                     |.||.||.||||||||.|||||.||.||||||||.||.||||||     |
BPUM_2289___h    869 AACTTGCTATGGATCAGGCAAGACTGTTTTCAGAAGAAGAGCTC-----A    913

BSNT_03804___    919 -----ATTATTGAACAGCTTGC--CGTCATGGACTATGAGATGAAAACCG    961
                          |||.|..||.||||..|  ||  ||.||.|||||.||||||||||
BPUM_2289___h    914 AGCAGATTGTCAAAGAGCTATCAACG--ATCGATTATGAAATGAAAACCG    961

BSNT_03804___    962 GGAAAAAGGACAAGCAGCTCCTGCTCGAACTGTTCCTTTTACAGCTGTTA   1011
                     |.|||||||||||||||||..||||.|||.||.|.||      |||    
BPUM_2289___h    962 GTAAAAAGGACAAGCAGCTATTGCTAGAATTGATTCT------GCT----   1001

BSNT_03804___   1012 AAAAGAAATGAAAAAAACGATC-CCCATTA-----TTGA   1044
                                         || ||.||||     ||||
BPUM_2289___h   1002 --------------------TCGCCTATTAGGCGCTTGA   1020


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