Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03802 and BPUM_2288

See Amino acid alignment / Visit BSNT_03802 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:21
# Commandline: needle
#    -asequence dna-align/BSNT_03802___rpsT.1.24716.seq
#    -bsequence dna-align/BPUM_2288___rpsT.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03802___rpsT-BPUM_2288___rpsT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03802___rpsT-BPUM_2288___rpsT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03802___rpsT
# 2: BPUM_2288___rpsT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 270
# Identity:     226/270 (83.7%)
# Similarity:   226/270 (83.7%)
# Gaps:           6/270 ( 2.2%)
# Score: 956.0
# 
#
#=======================================

BSNT_03802___      1 ATGCCAAACATTAAATCAGCGATTAAACGTACAAAAACAAACAACGAACG     50
                     ||||||||.||||||||||||||.||||||||||||||.||.||||||||
BPUM_2288___r      1 ATGCCAAATATTAAATCAGCGATCAAACGTACAAAAACGAATAACGAACG     50

BSNT_03802___     51 CCGCGTTCATAACGCGACAATCAAATCTGCTATGCGTACTGCAATCAAAC    100
                     |||.|..||.||||.|||||||||.|||||.|||||||||||.||.||||
BPUM_2288___r     51 CCGTGCACACAACGTGACAATCAAGTCTGCGATGCGTACTGCGATTAAAC    100

BSNT_03802___    101 AAGTTGAAGCTTCTGTTGCCAACAACGAAGCTGACAAAGCGAAAACTGCT    150
                     |||||||||.||||||.||.||||||||.|||||..||||.|||.|||||
BPUM_2288___r    101 AAGTTGAAGTTTCTGTAGCTAACAACGATGCTGAGCAAGCAAAAGCTGCT    150

BSNT_03802___    151 CTTACTGAAGCAGCTAAACGTATTGATAAAGCAGTGAAAACAGGTCTTGT    200
                     |||.||...||.||.|||||.|||||.|||||.||.|||||.||||||||
BPUM_2288___r    151 CTTTCTTCTGCTGCAAAACGCATTGACAAAGCCGTTAAAACTGGTCTTGT    200

BSNT_03802___    201 ACACAAAAATACCGCAGCT---CGATACAAATCAAGACTAGCGAAAAAAG    247
                     |||||||||   |||||||   ||.|||||.||||||||.||.|||.|||
BPUM_2288___r    201 ACACAAAAA---CGCAGCTGCGCGTTACAAGTCAAGACTTGCTAAACAAG    247

BSNT_03802___    248 TGAACGGACTTTCTGCATAA    267
                     |.||||||||||||||||||
BPUM_2288___r    248 TAAACGGACTTTCTGCATAA    267


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