Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03795 and BPUM_2282
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:21
# Commandline: needle
# -asequence dna-align/BSNT_03795___hrcA.1.24716.seq
# -bsequence dna-align/BPUM_2282___hrcA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03795___hrcA-BPUM_2282___hrcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03795___hrcA-BPUM_2282___hrcA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03795___hrcA
# 2: BPUM_2282___hrcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1070
# Identity: 766/1070 (71.6%)
# Similarity: 766/1070 (71.6%)
# Gaps: 76/1070 ( 7.1%)
# Score: 2538.0
#
#
#=======================================
BSNT_03795___ 1 ATGTTAACAAATCGTCAGCTGCTGATCCTTCAGGTTATAATCAACGATTT 50
||||||||||||||||||||..||||.||.||.||.||.||.||.||.||
BPUM_2282___h 1 ATGTTAACAAATCGTCAGCTTTTGATTCTGCAAGTCATCATTAATGACTT 50
BSNT_03795___ 51 TATTAAATCGGCACAGCCGGTGGGATCAAGAACTCTTTCGAAAAAAGATG 100
||||...|||||.|||||.||.||.|||||.||||||||.||||||||.|
BPUM_2282___h 51 TATTCGTTCGGCGCAGCCAGTTGGGTCAAGGACTCTTTCCAAAAAAGAGG 100
BSNT_03795___ 101 AAATCACATTTAGCTCTGCAACAATAAGAAACGAGATGGCTGACTTGGAG 150
|.||||||||.||||||||.||.||.||||||||.||||||||.||||||
BPUM_2282___h 101 ACATCACATTCAGCTCTGCGACGATTAGAAACGAAATGGCTGATTTGGAG 150
BSNT_03795___ 151 GAATTGGGCTTTATTGAAAAAACCCATTCATCCTCAGGACGTGTTCCGTC 200
|||.|.||.|||||.|||||.||||||||.||.||||||.|..||||.||
BPUM_2282___h 151 GAACTTGGTTTTATCGAAAAGACCCATTCTTCATCAGGAAGAATTCCTTC 200
BSNT_03795___ 201 AGAAAAAGGGTATCGGTACTATGTTGACCATTTGCTGTCACC-CGTCAAA 249
|||||||||.|||||.||.|||||.||.||||||||.||.|| || .|||
BPUM_2282___h 201 AGAAAAAGGATATCGTTATTATGTAGATCATTTGCTCTCTCCGCG-AAAA 249
BSNT_03795___ 250 CTGACGAAAAGCGACCTGGACCAAATCCACTC-GATCTTCAAAGAGAAAA 298
|||.||...|.|||.||.|..|..|||||.|| |.|.||| |.|||||||
BPUM_2282___h 250 CTGTCGTCTAACGAGCTTGTGCTCATCCAGTCGGCTTTTC-AGGAGAAAA 298
BSNT_03795___ 299 TTTTCGAGCTGGAGAAGACAGTTCAAAAATCAGCGCAAATTTTGTCCGAT 348
||||.|||||.||.||.||||||||||||||.|||.|||||||.||.|||
BPUM_2282___h 299 TTTTTGAGCTTGAAAAAACAGTTCAAAAATCGGCGGAAATTTTATCAGAT 348
BSNT_03795___ 349 CTGACGAATTACACATCCATCGTACTCGGGCCGAAGCTGAGTGAGAATTA 398
||.||.||.||.|||||.|||||.||.||.||.|||||||||||.|||
BPUM_2282___h 349 CTCACAAACTATACATCGATCGTGCTTGGTCCAAAGCTGAGTGAAAAT-- 396
BSNT_03795___ 399 CC--TTAAA-CAGATTCAAATCATTCCGATTCAGCCTGATATGGCGGTAG 445
| ||||| ||.|||||..|..|.||..|||||||..|.|..||.||.|
BPUM_2282___h 397 -CGATTAAAGCAAATTCAGCTTGTCCCCGTTCAGCCAAACAAAGCAGTCG 445
BSNT_03795___ 446 CGATTCTCGTTACCAATACGGGGCATGTGGAAAACAAAACGATTAACTT- 494
||||..|..||||..|.|..||.|||||.|||||||||||.||||.|||
BPUM_2282___h 446 CGATCATGATTACAGACAGCGGACATGTTGAAAACAAAACCATTACCTTC 495
BSNT_03795___ 495 TCCGACCAAAATGGATCTGTCTGATATTGAAAAACTGGTAAATATACTGA 544
||.||.| |..|.|||.|.||.||||||||.||.|||.|.|||||..|||
BPUM_2282___h 496 TCTGAGC-ATCTCGATGTCTCCGATATTGAGAAGCTGATGAATATTTTGA 544
BSNT_03795___ 545 ACGACCGTTTAAGC-GGCGTTCCAATGGATGAACTGAATGAGCGCATATT 593
|...|||.|| ||| ||||||||.|||||..|..||||.||..|.||.|.
BPUM_2282___h 545 ATAGCCGCTT-AGCTGGCGTTCCGATGGACCAGTTGAAGGACAGGATGTA 593
BSNT_03795___ 594 TAAAGAAGTTGTCATG----TACCTAAGACAGCACA---TTAAAA-ACTA 635
|||||||||.|||||| |.| ||||| |||||| |.||
BPUM_2282___h 594 TAAAGAAGTGGTCATGCTTTTGC--------GCACACATTTAAAAGATTA 635
BSNT_03795___ 636 TGACAATATACTCGACGCGCTTCGTTCAAC---CTTTCATTC--CACAAA 680
|||..|.||..|.||.|||||..| |||| .||.|| || ||||||
BPUM_2282___h 636 TGATCACATTTTAGATGCGCTCGG--CAACACATTTACA-TCAACACAAA 682
BSNT_03795___ 681 TCACAT---TGAAAAGTTGTTTTTTGGCGGGAAAATCAATATGCTGAACC 727
|| |.||||.|| ||.|||||||||||.||.||||||.||||.|
BPUM_2282___h 683 ----ATGAATCAAAACTT-TTCTTTGGCGGGAAGATTAATATGTTGAATC 727
BSNT_03795___ 728 AGCCTGAGTTCCATGATATCACCCGAGTTCGGTCGCTGCTTTCAT----- 772
|||||||.||.|||||.|||..|||..||||.||.| ||||
BPUM_2282___h 728 AGCCTGAATTTCATGACATCGACCGTATTCGCTCAC-----TCATGATGC 772
BSNT_03795___ 773 TAATTGAG--AAAGAACAGGATGTTTTAAAGCTGGTTCAATCC---CCGC 817
|.|||||| ||||| |.|||||..|..|||||.||| |||| || .
BPUM_2282___h 773 TGATTGAGCAAAAGA--ATGATGTCATGCAGCTGTTTC-ATCCAAACC-A 818
BSNT_03795___ 818 GCACGGGAATTTCGATTAAAATCGGAAAAGAAAACGACTATGAAGAGATG 867
||| .||.||..|.|||||||||||...|||||||.|.|..||||..|||
BPUM_2282___h 819 GCA-AGGCATCACCATTAAAATCGGTTCAGAAAACAATTTGGAAGCAATG 867
BSNT_03795___ 868 GAAAATTGCAGTCTGATTACGGCTTCTTATTCCGTAGA-CCAGAAGCAGA 916
||.||.||||||.||||.|||||..|||||||..|.|| |.|.||.|| .
BPUM_2282___h 868 GAGAACTGCAGTTTGATCACGGCGACTTATTCGATTGATCAAAAATCA-C 916
BSNT_03795___ 917 TCGGCTCAATTGCGATTATCGGCCCGACCCGCATGAATTATTCCAGG--- 963
|||||||.|||||..|.|||||.||.|||||||||.|||| |.||
BPUM_2282___h 917 TCGGCTCCATTGCCGTCATCGGACCAACCCGCATGGATTA---CGGGCGA 963
BSNT_03795___ 964 GTTGTCAGCCTGCTTCAGCATGTGACTTCGGACTTGTCAAAAGCA-TTAA 1012
||.||.||.||..|.||.|||||..|....|||||||||||.||| ||..
BPUM_2282___h 964 GTCGTTAGTCTTTTACATCATGTATCAAAAGACTTGTCAAACGCACTTTC 1013
BSNT_03795___ 1013 CAAGTCTGTATGATGAATAA 1032
||| |.||||||||||.||.
BPUM_2282___h 1014 CAA-TTTGTATGATGAGTAG 1032
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