Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03789 and BPUM_2278
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:20
# Commandline: needle
# -asequence dna-align/BSNT_03789___prmA.1.24716.seq
# -bsequence dna-align/BPUM_2278___prmA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03789___prmA-BPUM_2278___prmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03789___prmA-BPUM_2278___prmA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03789___prmA
# 2: BPUM_2278___prmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 970
# Identity: 722/970 (74.4%)
# Similarity: 722/970 (74.4%)
# Gaps: 68/970 ( 7.0%)
# Score: 2732.5
#
#
#=======================================
BSNT_03789___ 1 TTGAAATGGTCCGAATTAAGCATTCACACAACACATGAAGCGGTCGAACC 50
|||||.|||||.|||.|.|||.|.||.||||||.||||||||||.|||||
BPUM_2278___p 1 TTGAAGTGGTCAGAAATTAGCGTCCATACAACAAATGAAGCGGTGGAACC 50
BSNT_03789___ 51 TATCTCAAATATATTGCATGAAGCTGGTGCAAGTGGGGTTGTGATAGAGG 100
.|||.|.|||||.|||||||||||.|||||.|||||.||.|||||.||||
BPUM_2278___p 51 AATCACCAATATTTTGCATGAAGCAGGTGCGAGTGGTGTCGTGATTGAGG 100
BSNT_03789___ 101 ACCCGCTTGATTTAATTAAAGAACGTGAGAATGTGTACGGGGAAATCTAC 150
||||||||||||||.|.||.||||||||.|||||.|||||.||.||||||
BPUM_2278___p 101 ACCCGCTTGATTTAGTCAAGGAACGTGAAAATGTATACGGTGAGATCTAC 150
BSNT_03789___ 151 CAGCTCGACCCCAATGATTACCCAGATGAGGGTGTCATTGTCAAAGCATA 200
||||||||.||.|||||.||.||.||.||.||.|||||.||||||||.||
BPUM_2278___p 151 CAGCTCGATCCGAATGACTATCCTGAAGAAGGGGTCATCGTCAAAGCCTA 200
BSNT_03789___ 201 TCTGCCGGTTAACAGTTTTCTGGGCGAAACTGTAGACGGCATCAAAGAAA 250
|||.||..|.||.||.|||.|....|||||.|||||.|..|||||||||.
BPUM_2278___p 201 TCTTCCAATGAATAGCTTTTTAATGGAAACGGTAGATGAGATCAAAGAAG 250
BSNT_03789___ 251 CGATTAATAATCTCCTTCTTTACAATATTGAT-TTGGGCAGAAA------ 293
|.||.||.|||||.|||||.|||.|||||||| |||||| ||||
BPUM_2278___p 251 CCATCAACAATCTTCTTCTATACGATATTGATCTTGGGC-GAAATACGCT 299
BSNT_03789___ 294 --CCACATCACTATTTCTGAAGTAAATGAAGAAGAGTGGGCGACTGCCTG 341
|| ||||.||||||||||||||||||.|||||.||.||.||
BPUM_2278___p 300 GTCC--------ATTTGTGAAGTAAATGAAGAAGAATGGGCCACCGCATG 341
BSNT_03789___ 342 GAAAAAGTATTATCATCCTGTGAAAATTTCTGAAAAGTTTACAATTGTGC 391
|||.||.||.|||||||||||||||||.||||||||.||.||.||.||.|
BPUM_2278___p 342 GAAGAAATACTATCATCCTGTGAAAATCTCTGAAAAATTCACCATCGTTC 391
BSNT_03789___ 392 CGACGTGGGAGGAATATACGCCGGTCCATACTGATGAACTGATTATTGAA 441
|.||||||||.||||||||||||||.|||.||||||||||||||||||||
BPUM_2278___p 392 CAACGTGGGAAGAATATACGCCGGTTCATTCTGATGAACTGATTATTGAA 441
BSNT_03789___ 442 ATGGACCCGGGAATGGCTTTCGGCACAGGGACACATCCGACAACCGTACT 491
||||||||.||||||||.||.||.|||||||||||.||.||||||||.||
BPUM_2278___p 442 ATGGACCCAGGAATGGCATTTGGAACAGGGACACACCCAACAACCGTTCT 491
BSNT_03789___ 492 CTGCATTCAGGCGCTTGAACGCTTTGTGCAAAAGG---GTGATAAGGTGA 538
.||.||||||||||||||.||||.|||| |||| ..||||.|||.|
BPUM_2278___p 492 TTGTATTCAGGCGCTTGAGCGCTATGTG---AAGGAAAACGATACGGTAA 538
BSNT_03789___ 539 TTGATGTCGGCACTGGTTCGGGAATTTTAAGTATTGCGGCTGCAATGCTT 588
|||||||.||.||.||.||.||.|||||||||.|.||.||.||.|||.||
BPUM_2278___p 539 TTGATGTTGGAACAGGCTCTGGGATTTTAAGTGTGGCAGCAGCGATGGTT 588
BSNT_03789___ 589 ------AAGG-CTGAATCGGTTCATGCCTACGATCTTGATCCCGTGGCTG 631
|||| | .||||.||||..|||||.||..||||.||.|
BPUM_2278___p 589 GGAGCAAAGGAC-------ATTCAAGCCTTTGATCTCGACACCGTTGCGG 631
BSNT_03789___ 632 TAGAAAGTGCACGCCTCAATCTCAAGCTGAACAAAGTC-AGCGATATTGC 680
|.|||||||| .||||..|||| || |||.|.||.|.
BPUM_2278___p 632 TTGAAAGTGC------------GAAGCAAAACA---TCGAGCTAAATGGT 666
BSNT_03789___ 681 TCAAGTG--------------AAGCAAAACAATTTGTTAGACGGGATTGA 716
..||||| ||||||||.||.||..|.||.||||||..
BPUM_2278___p 667 GTAAGTGAACAAGTAACGGTCAAGCAAAATAACTTACTTGATGGGATTTC 716
BSNT_03789___ 717 AGGGGAACATGATGTGATTGTGGCCAACATTTTGGCTGAAGTCATTCTTC 766
|||.||||||||||||||.||.|||||||||.|.||.|||||.|||.|.|
BPUM_2278___p 717 AGGTGAACATGATGTGATCGTCGCCAACATTCTCGCAGAAGTAATTTTGC 766
BSNT_03789___ 767 GCTTTACTTCACAAGCGTACAGCCTGTTAAAAGAAGGCGGCCACTTTATT 816
|||||||....|||||.||...|.|.||.||..|||..|||.|.||.|||
BPUM_2278___p 767 GCTTTACAGATCAAGCCTATGACTTATTGAAGAAAGATGGCTATTTCATT 816
BSNT_03789___ 817 ACGTCAGGAATCATCGGTCATAAAAAACAAGAAGTAAAAGAAGCACTGGA 866
||.|||||.|||||.||.||.||.|||..|.||||.|||..||||.|.||
BPUM_2278___p 817 ACTTCAGGCATCATTGGACAAAAGAAATTACAAGTCAAAACAGCATTAGA 866
BSNT_03789___ 867 ACAAGCTGGCTTTACCATTGTAGAAATCCTTTCAATGGAAGATTGGGTCA 916
|.||||.||.|||..||||||.|||.|.||.|||||||||||||||||||
BPUM_2278___p 867 AGAAGCAGGTTTTGACATTGTTGAAGTGCTATCAATGGAAGATTGGGTCA 916
BSNT_03789___ 917 GCATTATTGCGAAAAAATAA 936
|||||||.||||||||||||
BPUM_2278___p 917 GCATTATAGCGAAAAAATAA 936
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