Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03781 and BPUM_2270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:19
# Commandline: needle
# -asequence dna-align/BSNT_03781___yqfB.1.24716.seq
# -bsequence dna-align/BPUM_2270___yqfB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03781___yqfB-BPUM_2270___yqfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03781___yqfB-BPUM_2270___yqfB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03781___yqfB
# 2: BPUM_2270___yqfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 548
# Identity: 275/548 (50.2%)
# Similarity: 275/548 (50.2%)
# Gaps: 202/548 (36.9%)
# Score: 617.0
#
#
#=======================================
BSNT_03781___ 1 ATGGAAGATT-TA-CTGACCAATCCGCTTA-TTATTGCAGCGATCATCGG 47
|||| |.||| || .||| .|||||| ||| |.|||||....||||||||
BPUM_2270___y 1 ATGG-ACATTCTATTTGA-AAATCCG-TTACTAATTGCGATTATCATCGG 47
BSNT_03781___ 48 AATCATTTCTGC--GATTT-------TCGGCAAA-AAGAGCAAAGAAGAA 87
.||.||.||||| .|||| |||||||| ||||| .|||||.|
BPUM_2270___y 48 TATTATCTCTGCTGTATTTGGGAAAATCGGCAAACAAGAG--GAGAAGGA 95
BSNT_03781___ 88 AAGCAAAACAGCCAAAAAAG--AAAAAAA-------CCTCAACACGTGCA 128
| |||.|||.|| | ||.|.|| ||||| .|
BPUM_2270___y 96 A--CAAGACAACC------GGCAACATAAGCCGGCTCCTCA-------GA 130
BSNT_03781___ 129 ATCTGCTTCT-TCTCAAAAG-AAGCAG-----------TCAAAAGA---- 161
||..||.|.| .|||||||| |||||| ||||.|||
BPUM_2270___y 131 ATAAGCCTATGCCTCAAAAGAAAGCAGAAAACCCGGTCTCAACAGACCAG 180
BSNT_03781___ 162 --------------AGATGCCCCTGCACCT-ATCCCTAACCGTATG---- 192
.|||| |||| | ||| |||
BPUM_2270___y 181 TTGGACGATTTTGGCGATG----TGCA--TGATC---------ATGGCGG 215
BSNT_03781___ 193 ---GAACAGGCAAG-------------ACGGGA----------------- 209
|||.|..|||| ||.|||
BPUM_2270___y 216 GATGAAGAAACAAGGTTCACAGTCCTTACAGGATCGTTATACCGCTACAC 265
BSNT_03781___ 210 -AGC------GGAAGAAAGACGCAGGGAAACAGCAAGAAACCTG---AAA 249
||| |||||||| ||||.|||.|| ||| |||
BPUM_2270___y 266 TAGCTGAAATGGAAGAAA--------GAAAAAGCGAG----CTGAATAAA 303
BSNT_03781___ 250 GGG---------CTGGAACGAGATCTTGCTGCTGCCAAA--CAAAAAACA 288
|.| ||.|||.||||.|||.| || |.||||.||
BPUM_2270___y 304 GAGTTCAAATCTCTTGAAAGAGAACTTAC--------AAGGCCAAAAGCA 345
BSNT_03781___ 289 GTATAC-------ACAAAACAAAAAATGCTTCAG---GTGAATAAGGACA 328
|.|| | |..||.|..||||||.||.|| .|.||..|.||.|
BPUM_2270___y 346 GCAT-CTGCTGGAATGAAGCCGAAAATGATTGAGAAACTCAACCAAGATA 394
BSNT_03781___ 329 CCGTCGTACAGGGAATCGTTCTAGGAGAGGTGTTCGG---GCCTCCACGG 375
|.|||||.||.||.||..|.||.||.||.||.||.|| |||| ||.
BPUM_2270___y 395 CGGTCGTTCAAGGGATGATCCTTGGTGAAGTATTTGGAGAGCCT---CGT 441
BSNT_03781___ 376 GCGAAAAAACCTCACCGTACGATG---CGCTCAGCCCGTAAAAATTAA 420
||||||||.||.||.||.|||||| ||.| ||
BPUM_2270___y 442 GCGAAAAAGCCACATCGAACGATGAAACGAT-AG-------------- 474
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