Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03777 and BPUM_2266
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:19
# Commandline: needle
# -asequence dna-align/BSNT_03777___phoH.1.24716.seq
# -bsequence dna-align/BPUM_2266___phoH2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03777___phoH-BPUM_2266___phoH2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03777___phoH-BPUM_2266___phoH2.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03777___phoH
# 2: BPUM_2266___phoH2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 979
# Identity: 728/979 (74.4%)
# Similarity: 728/979 (74.4%)
# Gaps: 38/979 ( 3.9%)
# Score: 2674.0
#
#
#=======================================
BSNT_03777___ 1 ATGACAGAACATTTACTTGCGATGAATCAAAAACTGAAAAACCCGGACGA 50
|||||||||||||||||||..||..|.||||||.|..|.|.|||..||||
BPUM_2266___p 1 ATGACAGAACATTTACTTGAAATTCAACAAAAATTAGATAGCCCAAACGA 50
BSNT_03777___ 51 GGCGCTTTCACTCTTCGGGAACCAAGATTCTTTTTTGAAATTGATGGAGA 100
.|||.||.|..|.||.||.||.||||||.|||.|.|||||.|||||||.|
BPUM_2266___p 51 AGCGATTGCTTTATTTGGTAATCAAGATGCTTATCTGAAACTGATGGAAA 100
BSNT_03777___ 101 AAGATCTGAATGTAAATATCATTACGCGCGGCGAGACGATTTATGTTTCA 150
|.||.||||||||....||.|||||||||||.||.|...|.||||||||.
BPUM_2266___p 101 ACGAGCTGAATGTCTCCATTATTACGCGCGGAGAAAAAGTGTATGTTTCT 150
BSNT_03777___ 151 GGCGATGATGAATCGTTTCAGATTGCAGACA-------GGCTGCTGGGAT 193
||..|.||.|.||| .||| .|.||| |.|||.||..||
BPUM_2266___p 151 GGTCAGGAAGCATC----AAGA---GAAACAGCGAGCCGTCTGATGACAT 193
BSNT_03777___ 194 CGCTCCTCGCTTTAATTCGCAAGGGGATAGAGATCTCTGAACGTGATGTG 243
|.|||.|...|.|.||.||.||.||.||.|||||.||||||||.|||||.
BPUM_2266___p 194 CTCTCTTACATCTCATCCGAAAAGGAATTGAGATTTCTGAACGGGATGTC 243
BSNT_03777___ 244 ATTTACGCCATCAAAATGGC----AAAG--AAGAATGAACTTGAATACTT 287
.|.||.|||||.|||||||| |||| ||| ||..|.||.||
BPUM_2266___p 244 GTATATGCCATTAAAATGGCGCAAAAAGACAAG------CTCAATTATTT 287
BSNT_03777___ 288 TGAAAGCATGTATGAAGAAGAAATTACAAAAAACGCAAAAGGCAAATCAA 337
|||||..|||||||||||.||||||||.|||||.||.|||||.||.||||
BPUM_2266___p 288 TGAAAATATGTATGAAGATGAAATTACGAAAAATGCTAAAGGAAAGTCAA 337
BSNT_03777___ 338 TCCGTGTAAAAACAATGGGACAGCGGGAATACGTGGCCGCTATGAAGCGG 387
||.|.||||||||.||.||.|||||||||||.|..||.||.|||||
BPUM_2266___p 338 TCAGGGTAAAAACCATTGGCCAGCGGGAATATGCTGCGGCAATGAA---- 383
BSNT_03777___ 388 A----ATGACCTTGTATTCGGCATTGGTCCGGCGGGAACCGGGAAAACGT 433
| ||||||||||.||.||.|||||.||.||.|||||.|||||.||||
BPUM_2266___p 384 AAAAGATGACCTTGTCTTTGGAATTGGACCAGCTGGAACAGGGAAGACGT 433
BSNT_03777___ 434 ACCTGGCTGTCGTAAAAGCAGTCCATGCTTTAAAAAACGGACATATCAAA 483
|..||||.|||||.||.||.||.|||||..|.|||||.||||||.|.|||
BPUM_2266___p 434 ATTTGGCAGTCGTCAACGCCGTACATGCACTGAAAAATGGACATGTGAAA 483
BSNT_03777___ 484 AAAATCATTTTAACAAGACCTGCCGTGGAAGCCGGTGAAAGCCTTGGTTT 533
..|||.||..|.||||||||.||.||.|||||.||.||.||.|||||.||
BPUM_2266___p 484 CGAATTATCCTGACAAGACCAGCTGTAGAAGCAGGAGAGAGTCTTGGCTT 533
BSNT_03777___ 534 TCTCCCAGGTGACCTAAAAGAAAAAGTAGATCCTTATTTGCGCCCGCTGT 583
|.|.||||||||.||||||||||||||||||||||||||..|.||.||.|
BPUM_2266___p 534 TTTACCAGGTGATCTAAAAGAAAAAGTAGATCCTTATTTAAGACCACTAT 583
BSNT_03777___ 584 ATGACGCTCTCCATGATGTGCTTGGGGCA--GATCATACAGAACGTCTGA 631
||||.||..|.|||||||||||| |||| ||||||||.||||||.|.|
BPUM_2266___p 584 ATGATGCCTTACATGATGTGCTT--GGCAGTGATCATACGGAACGTTTAA 631
BSNT_03777___ 632 TGGAAAGAGGCATCATTGAAATTGCTCCGCTCGCATATATGAGGGGGCGG 681
|.||..|.||..|.||||||||.||.||.||.||.||.|||||.||||||
BPUM_2266___p 632 TCGAGCGTGGTGTGATTGAAATAGCGCCTCTTGCCTACATGAGAGGGCGG 681
BSNT_03777___ 682 ACGCTCGATGATGCTTATGTTATACTTGATGAAGCACAGAATACCACGCC 731
||.||||||||.||.|.||||||..|.|||||||||||||||||.|||||
BPUM_2266___p 682 ACACTCGATGACGCATTTGTTATTTTAGATGAAGCACAGAATACAACGCC 731
BSNT_03777___ 732 TGCTCAAATGAAAATGTTTTTGACGAGACTGGGTTTTGGCTCTAAAATGA 781
|||.||||||||||||||||||||||||||.||.|||||||||||||||.
BPUM_2266___p 732 TGCCCAAATGAAAATGTTTTTGACGAGACTTGGGTTTGGCTCTAAAATGG 781
BSNT_03777___ 782 TCATTACAGGTGACGTCAGCCAAATTGATCTGCCGAAAGGCGTCAAATCG 831
||||||||||.||..|.|..||.|||||..|||||||.|||.|..|.||.
BPUM_2266___p 782 TCATTACAGGAGATATTACACAGATTGACTTGCCGAAGGGCATGCAGTCT 831
BSNT_03777___ 832 GGACTTGCAGTAGCGAAGGAGATGCTGAAAGGAATAGACGGCATTTCTAT 881
||.|||||||..||.|||||.|||||...||..||..|.|||||.||..|
BPUM_2266___p 832 GGCCTTGCAGCTGCAAAGGACATGCTTGCAGAGATCAAGGGCATCTCATT 881
BSNT_03777___ 882 GATTGAGCTAGACCAGACAGACGTGGTCAGACATCCGCTTGTTGCGAAAA 931
.||||||||||||||.|||||.|||||||||||.||||||||.||.||.|
BPUM_2266___p 882 TATTGAGCTAGACCAAACAGATGTGGTCAGACACCCGCTTGTGGCAAAGA 931
BSNT_03777___ 932 TTATTGAAGCATACGATAAGCAAAATTAA 960
|.||.|.|||||||||.||||||||.|.|
BPUM_2266___p 932 TCATCGGAGCATACGAAAAGCAAAAATGA 960
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