Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03771 and BPUM_2262
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:18
# Commandline: needle
# -asequence dna-align/BSNT_03771___era.1.24716.seq
# -bsequence dna-align/BPUM_2262___era.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03771___era-BPUM_2262___era.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03771___era-BPUM_2262___era.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03771___era
# 2: BPUM_2262___era
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 929
# Identity: 719/929 (77.4%)
# Similarity: 719/929 (77.4%)
# Gaps: 46/929 ( 5.0%)
# Score: 2754.5
#
#
#=======================================
BSNT_03771___ 1 ATGACGAACGAAAGCTTTAAATCAGGATTTGTATCCATTATTGGAAGACC 50
|||||.|||||||||||.|||||||||||||||||.||||||||||||||
BPUM_2262___e 1 ATGACTAACGAAAGCTTCAAATCAGGATTTGTATCAATTATTGGAAGACC 50
BSNT_03771___ 51 AAACGTAGGAAAATCTACATTTTTGAACAGAGTCATTGGACAAAAAATCG 100
|||.|||||||||||.||.|||.|.||..|.||.|||||||||||.||.|
BPUM_2262___e 51 AAATGTAGGAAAATCAACTTTTCTTAATCGTGTTATTGGACAAAAGATTG 100
BSNT_03771___ 101 CGATCATGAGCGATAAGCCCCAAACGACGAGAAACAAGGTGCAAGGAGTA 150
|.||||||||.|||||||||||||||||..||||.||.||||||||.||.
BPUM_2262___e 101 CTATCATGAGTGATAAGCCCCAAACGACACGAAATAAAGTGCAAGGTGTC 150
BSNT_03771___ 151 CTGACGACAGGCACATCACAAACCATTTTTATTGACACACCAGGGATTCA 200
.|.||.|||..|.|.||||||||.||.|||||.||.||||||||.|||||
BPUM_2262___e 151 TTAACAACAAACTCGTCACAAACGATCTTTATCGATACACCAGGTATTCA 200
BSNT_03771___ 201 TAAACCTAAGCATAAGCTTGGGGACTTTATGATGAAAGTGGCGCAAAATA 250
|||||||||||||||||||||.||.|||||||||||||||||.|||||||
BPUM_2262___e 201 TAAACCTAAGCATAAGCTTGGTGATTTTATGATGAAAGTGGCTCAAAATA 250
BSNT_03771___ 251 CATTAAAAGAAGTCGATTTGATCTTGTTTATGATCAATGCTGAGGAAGGC 300
||.|.||.||||||||..||||||||||||||||||||||..||||||||
BPUM_2262___e 251 CACTGAAGGAAGTCGACCTGATCTTGTTTATGATCAATGCAAAGGAAGGC 300
BSNT_03771___ 301 TACGGGAAGGGCGACGAATTCATCATTGA--GA---AATTGCAGACGATG 345
||.||.|||||.||.|||||||||||||| || || |||.|| .
BPUM_2262___e 301 TATGGCAAGGGTGATGAATTCATCATTGAACGACTCAA--GCAAAC---A 345
BSNT_03771___ 346 TCTACGCCTGTATTCTTAATCGTAAACAAAATCGATAAAATTCATCCCGA 395
|||||.||.|||||..||.||||.||.||||||||..|||||||.||.||
BPUM_2262___e 346 TCTACACCAGTATTTCTAGTCGTCAATAAAATCGACCAAATTCACCCAGA 395
BSNT_03771___ 396 CCAATTGCTTCTGCTAATTGACGAATACCGCAAACGTTATCCTTTTAAGG 445
..|..||.|.||..|||||||.||||||||||.|||||||||.|||||||
BPUM_2262___e 396 TGAGCTGTTCCTTTTAATTGATGAATACCGCACACGTTATCCATTTAAGG 445
BSNT_03771___ 446 AAATTGTTCCGATTTCTGCTTTAGAAGGAAATAACATCGAAAC-CTTGCT 494
|||||||.||.|||||.|||.|.||||||||.|||||.||.|| |||
BPUM_2262___e 446 AAATTGTGCCAATTTCAGCTCTTGAAGGAAACAACATTGATACGCTT--- 492
BSNT_03771___ 495 CGCT----CAGATTGAAGCGTATTTGCCGGAAGGGCCGCAATTCTATCCG 540
|| |||.||||||..|||.|.||.||.||.||||||||.|| ||.
BPUM_2262___e 493 --CTTCAGCAGGTTGAAGGTTATCTTCCTGAGGGCCCGCAATTTTA-CCC 539
BSNT_03771___ 541 AG-TGACCAGGTAACTGACCACCCTGAACGATTTATCATTTCTGAATTAA 589
|| .||.||.|||||.|||||.||.||.||||||||.|||||||||||||
BPUM_2262___e 540 AGCAGATCAAGTAACAGACCATCCAGAGCGATTTATTATTTCTGAATTAA 589
BSNT_03771___ 590 TCAGGGAAAAGGTGCTGCATTTGACGAGAGAAGAAATCCCGCACAGCATT 639
|..|.|||||.|||||||||||.|||||||||||.||.|||||.||||||
BPUM_2262___e 590 TTCGTGAAAAAGTGCTGCATTTAACGAGAGAAGAGATTCCGCATAGCATT 639
BSNT_03771___ 640 GCGGTGGCCATCGAATCCATCAAAGGGCAG--GACAACG----GTTCTGT 683
||.||.||.|||||||||||.|| |.||| ||.||.| |.||
BPUM_2262___e 640 GCAGTTGCGATCGAATCCATTAA--GCCAGATGAAAATGGCAAGATC--- 684
BSNT_03771___ 684 GCACGTAGCGGCAACGATTGTGGTCGAGCGGGATTCCCAGAAAGGCATCG 733
||.||.|||||.||.|||||.||.||.||.|||||.||.|||||.||.|
BPUM_2262___e 685 -CATGTGGCGGCGACCATTGTCGTAGAACGTGATTCGCAAAAAGGGATTG 733
BSNT_03771___ 734 TGATCGGTAAAAAAGGAAGCCTTCTAAAAGAGGTTGGAAAAAGAGCG--- 780
||||.||.|||..|||.|||.|..|||||||.||.|||.|||.||||
BPUM_2262___e 734 TGATTGGGAAACGAGGCAGCTTATTAAAAGAAGTGGGACAAAAAGCGCGC 783
BSNT_03771___ 781 AGAGCGGATATTGAAGCACTGTTGGGCTCCCGTGTCTACCTTGAATTGTG 830
||| |||||.||||||||..|.||.||....||.||.||.||..|.||
BPUM_2262___e 784 AGA---GATATCGAAGCACTTCTCGGTTCAAAAGTGTATCTGGAGCTTTG 830
BSNT_03771___ 831 GGTGAAAGTGCAGAAAGACTGGCGTAATAAAATGTCC---CAGCTTCGCG 877
|||.||.||.|||||.|||||||||||||| |||| ||.|||||.|
BPUM_2262___e 831 GGTAAAGGTTCAGAAGGACTGGCGTAATAA---GTCCACTCACCTTCGTG 877
BSNT_03771___ 878 ATTTTGGCTTTAAAGAGGACGAATATTAA 906
|.||.||.||||.|||.||||||||||||
BPUM_2262___e 878 ACTTCGGATTTAGAGAAGACGAATATTAA 906
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