Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_03769 and BPUM_2260

See Amino acid alignment / Visit BSNT_03769 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:18
# Commandline: needle
#    -asequence dna-align/BSNT_03769___recO.1.24716.seq
#    -bsequence dna-align/BPUM_2260___recO.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03769___recO-BPUM_2260___recO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03769___recO-BPUM_2260___recO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03769___recO
# 2: BPUM_2260___recO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 800
# Identity:     551/800 (68.9%)
# Similarity:   551/800 (68.9%)
# Gaps:          61/800 ( 7.6%)
# Score: 1811.0
# 
#
#=======================================

BSNT_03769___      1 ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGA     50
                     |||||.|..|||.|||||||||||||.|||.|.||||..|||||.||.||
BPUM_2260___r      1 ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGA     50

BSNT_03769___     51 GACGAATAAAATCGTAACTTTACTGACAAGAGAACACGGAAAAATAGGTG    100
                     .||.||.|||||.||.||..|.||.||.||||||||.||.|||||.||||
BPUM_2260___r     51 AACAAACAAAATTGTCACGCTGCTCACTAGAGAACATGGGAAAATTGGTG    100

BSNT_03769___    101 TTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGC    150
                     |.||||||.|||||||.||||||.|.||||||||..|.|||||..|.|||
BPUM_2260___r    101 TGATGGCAAGAGGCGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGC    150

BSNT_03769___    151 CAGCCCTTTTTGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGG    200
                     |||||.|||||.||.||..|.|||.|.||.|||..|.||.|.||.||.||
BPUM_2260___r    151 CAGCCGTTTTTATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGG    200

BSNT_03769___    201 AACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGCATCAGGGAAG    250
                     ||||||.|||||.||.||||||||....||.|||.|...|||..||||||
BPUM_2260___r    201 AACGCTCCAGCAAGGTGAAATGATTGAAAGTATGCGGACCATTCGGGAAG    250

BSNT_03769___    251 ACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGA    300
                     |.||.|||||.||.||||||||.||.||.||..|.||.|||.||||.|.|
BPUM_2260___r    251 ATTTATTTTTGACCGCATATGCCGCATACATGACAGAATTACTCGATAAA    300

BSNT_03769___    301 GGCACAGAAGAAAAAAAGCCAAATCCTTATTTATTTGAATTCATATTAGA    350
                     |||||||||||||||||||||||.||||||||.|||||..||.|..|..|
BPUM_2260___r    301 GGCACAGAAGAAAAAAAGCCAAACCCTTATTTGTTTGAGCTCTTGCTTCA    350

BSNT_03769___    351 ATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA    400
                     |||..|....||.|||||||||||.||||||.|.|||.|||||    |.|
BPUM_2260___r    351 ATCTCTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATC----TTA    396

BSNT_03769___    401 TT----------GTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCC    440
                     ||          |||.|||||    |..||.|||  |||||..||.|.||
BPUM_2260___r    397 TTTATCGTAGAGGTTAAAATG----TTATCAGTG--ATGGGGATGAAGCC    440

BSNT_03769___    441 TGAGCTGAATCATTGTGTACATTGT-----AAGAGCCAAGACGGAACCTT    485
                     .||.||..||||.|||||.||||||     ||     ||||.||....||
BPUM_2260___r    441 CGAACTTGATCAATGTGTTCATTGTGGTCAAA-----AAGAAGGGCAGTT    485

BSNT_03769___    486 TCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAA    535
                     |||||||||..||.|.|||||.||.||.||.|||||....||.|||...|
BPUM_2260___r    486 TCATTTCTCAATTAGAGATAACGGCTTCATTTGCCAAAATTGCTTTTCTA    535

BSNT_03769___    536 AAGATCCTTACAGGATACCGCTC-AAACCGCA--AACGGCAAGGCTGTTA    582
                     |||||||.||   .|.||.||.| .|.||.||  |.|.|||||||||.|.
BPUM_2260___r    536 AAGATCCGTA---TAAACTGCCCTTATCCCCAGCAGCTGCAAGGCTGCTC    582

BSNT_03769___    583 AGACTCTTTTACTATTTTGATCTGTCGAGGCTCGG-CA-----ATGTGTC    626
                     .|..|.|||.|.|||||||||.|.||.|||||||| ||     |||||  
BPUM_2260___r    583 CGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTTGATGTG--    630

BSNT_03769___    627 CTTAAA----AGAGGAAACAAAAGCTGAATTAAAG-CAAGTGATTGATTT    671
                        |||    |.|.|||||||.|    ||||  .| ||||||.|.|||..
BPUM_2260___r    631 ---AAACCGCAAACGAAACAAGA----AATT--CGTCAAGTGCTCGATCA    671

BSNT_03769___    672 ATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTAG    721
                     .||.||.||.||.|||||.||..|.|||||.||||||||....||..|..
BPUM_2260___r    672 CTACTATGACGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATGA    721

BSNT_03769___    722 ATCAAATGGAAAGCATGAAACATCTTATG---GGTGAAAACAAAAGTTGA    768
                     |||||||||||..|||||||.|.||.|||   ||.|||||||||||||||
BPUM_2260___r    722 ATCAAATGGAATCCATGAAAAAGCTCATGGGCGGGGAAAACAAAAGTTGA    771


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03769 and BPUM_2260

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
