Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03767 and BPUM_2258
See
Amino acid alignment /
Visit
BSNT_03767 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:18
# Commandline: needle
# -asequence dna-align/BSNT_03767___glyS.1.24716.seq
# -bsequence dna-align/BPUM_2258___glyS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03767___glyS-BPUM_2258___glyS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03767___glyS-BPUM_2258___glyS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03767___glyS
# 2: BPUM_2258___glyS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2206
# Identity: 1432/2206 (64.9%)
# Similarity: 1432/2206 (64.9%)
# Gaps: 326/2206 (14.8%)
# Score: 4388.0
#
#
#=======================================
BSNT_03767___ 1 ATGAGTAAACAGGATTTACTTTTAGAGATCGGATTAGAGGAAATGCCGGC 50
||||.||||||.|||.||.|..|.||.|||||.|||||.||.||||||||
BPUM_2258___g 1 ATGAATAAACAAGATGTATTACTCGAAATCGGCTTAGAAGAGATGCCGGC 50
BSNT_03767___ 51 GCGCTTTTTGAATGAAAGCATGGTTCAGCTTGGCGACAAGCTGACAGGCT 100
.|||||..||...|||||||.....|||||.|||||.||..|.|.||..|
BPUM_2258___g 51 TCGCTTCATGTCAGAAAGCACAAAGCAGCTAGGCGAAAAAGTAAAAGCGT 100
BSNT_03767___ 101 GGCTTAAA--GAAAAAAATATTACTCACGGTGAAG-TGAAACTC--TTCA 145
||.||||| |.||||.||.|.|.| ||||| ||..|||| ||.|
BPUM_2258___g 101 GGTTTAAAACGCAAAACATTTCATT-----TGAAGATGTTACTCTATTTA 145
BSNT_03767___ 146 ATACACCGAGACGTCTTGCTGTGTTCGTTAAGGGTGTCGCAGAAAAGCAG 195
|..||||.||||||||||||||..|.||.|..||||||||||||||.||.
BPUM_2258___g 146 ACTCACCAAGACGTCTTGCTGTACTTGTGACAGGTGTCGCAGAAAAACAA 195
BSNT_03767___ 196 GATGATATAAAAGAAGAAGCAAAAGGACCTGCGAAAAAAATTGCCCTTGA 245
||.||.||.|||||||||||||||||.||.||.|||||.|||||.|..||
BPUM_2258___g 196 GAAGACATCAAAGAAGAAGCAAAAGGTCCGGCTAAAAAGATTGCGCAAGA 245
BSNT_03767___ 246 TGCGGACGGGAACTGGACAAAAGCGGC--AATCGGCTTTTCAAAAGGCCA 293
||||||.||.||||||||||||||.|| || |.|||| |||
BPUM_2258___g 246 TGCGGAAGGCAACTGGACAAAAGCTGCGGAA---GGTTTT------GCC- 285
BSNT_03767___ 294 AGGCGCG---AATGTG--------GAAGACCTGTACATCAAAGAAGTAAA 332
|||| ||.||| ||.||.||.||..|.|||||..|.||
BPUM_2258___g 286 ---CGCGGACAAGGTGCTTCAACAGATGATCTCTATTTTAAAGAGATCAA 332
BSNT_03767___ 333 AGGCATAGAGTATGT--ATTCGTGCAAAAATTCCAAGCCGGCCAAG--AA 378
|||..|.||.||||| || |||||.||.||..||| ||| ||
BPUM_2258___g 333 AGGAGTGGATTATGTCCAT--GTGCAGAAGTTTGAAG------AAGGAAA 374
BSNT_03767___ 379 ACGAAGT------CGCTTCTGCCAGAATT------GA--GCGGTTTAATT 414
|| |||| | ||||||||||.||| || ||...||.|||
BPUM_2258___g 375 AC-AAGTTAAAGAC-CTTCTGCCAGCATTAGGTGAGATCGCCACTTCATT 422
BSNT_03767___ 415 ACAAGCTTGCATTTCCCGAAAAACATGCGCTGGGGAAATGAAGATTTGCG 464
||| |||.||.||.||||||.|.|||||||...|||||||.||
BPUM_2258___g 423 --AAG------TTTTCCAAAGAACATGAGATGGGGAAGCAAAGATTTACG 464
BSNT_03767___ 465 TTATATCCGACCGATCAAATGGATTGTCGCATTATTTGGACAGGA----- 509
.||.|||||.|||||.|||||||||||....|||||||||.||||
BPUM_2258___g 465 CTACATCCGTCCGATTAAATGGATTGTTTGTTTATTTGGAGAGGAGATTG 514
BSNT_03767___ 510 -------TGTCATTCCATTTTCGATCACAAACGTTGAGTCTGGACG---G 549
||.||||.| |..|.|.|.||.| ||.|| |
BPUM_2258___g 515 TACCTGTTGACATTGC---TGGGGTGAAAAGC---------GGCCGTGAG 552
BSNT_03767___ 550 ACAACACAGGGACATCGTTTCCTCGGACATGAAGTG-TCAATTGAATCAC 598
||||.| ||.||.||||||||.||..|.|.||.| || ||.||.||||
BPUM_2258___g 553 ACAAGA---GGCCACCGTTTCCTTGGTAAGGCAGCGATC-ATCGACTCAC 598
BSNT_03767___ 599 CTTCAGCTTATGAAGAGCAGCTGAAA--------GAACAGCATGTTATTG 640
||.|..|||||| ||| ||| ||.||...|||.||||
BPUM_2258___g 599 CTGCTTCTTATG------AGC--AAACATTGCGCGATCAATTTGTCATTG 640
BSNT_03767___ 641 CTGATCCTAGCGTCCG---AAAGCAAATGATTCAATC---------TCAG 678
|.||| ||.| ||||.||| |||.| .|||
BPUM_2258___g 641 CAGAT-------TCAGATAAAAGAAAA-----CAAGCCATTACCGAGCAG 678
BSNT_03767___ 679 CTGGAAGCAATGGCTGCTGAAAACA--ATTGGAGCATTCCAGTTGACGAA 726
||..|.||..|.|||.|.||||| | ||.||.| |||||.|||||....
BPUM_2258___g 679 CTAAATGCTCTAGCTTCAGAAAA-AGGATGGGTG-ATTCCTGTTGATCCT 726
BSNT_03767___ 727 GACCTTCTTGATGAAGTGAATCATTTAGTAGAATACCCGACAGCTCTTTA 776
||.|||||.||.||.||.||..||.|.|||||||||||.||.|..||.|.
BPUM_2258___g 727 GAGCTTCTAGAAGAGGTCAACAATCTTGTAGAATACCCAACGGTGCTATC 776
BSNT_03767___ 777 CGGTTCATTTGAATCGGAGTTTCTGTCAATTCCTGAAGAAGTGCTTGTCA 826
.|||||.||||||...||.||.||..||.|.||.||||||||..|.||.|
BPUM_2258___g 777 GGGTTCCTTTGAAGAAGAATTCCTTGCATTACCGGAAGAAGTATTGGTAA 826
BSNT_03767___ 827 CGACAATGAAAGAGCATCAGCGCTACTTCCCTGTCAAAGA----CAAAAA 872
||||||||||||||||||||||.||.||||||||.|||.| |||
BPUM_2258___g 827 CGACAATGAAAGAGCATCAGCGTTATTTCCCTGTGAAAAATGAGCAA--- 873
BSNT_03767___ 873 CGGTGACCTGCTGCCTCACTTTATCACAGTCCGAAACGGCAACAGCCACG 922
||.||..|..||||.||||||||.||.||..||||.||.|||||..|.|
BPUM_2258___g 874 -GGGGAATTATTGCCGCACTTTATTACGGTGAGAAATGGAAACAGTGAAG 922
BSNT_03767___ 923 CGATTGAAAATGTGGCCCGAGGCAATGAAAAAGTGCTGCGCGCACGTTTA 972
||.||||||||||.||..||||.||.||||||||.||.||.|||||||||
BPUM_2258___g 923 CGCTTGAAAATGTCGCAAGAGGGAACGAAAAAGTACTTCGTGCACGTTTA 972
BSNT_03767___ 973 TCTGATGCTTCATTCTTCTACAAGGAAGATCAGAAACTAAACATTGATGC 1022
||.||||||.|.||||||||.||.|||||..|.||||||..||||||.|.
BPUM_2258___g 973 TCAGATGCTGCCTTCTTCTATAAAGAAGACGAAAAACTAGTCATTGAAGA 1022
BSNT_03767___ 1023 AAATGTGAAGAAGCTTGAAAATATCGTTTTCCATGAAGAGCTTGGTTCTC 1072
.|||.|.|||||||||||.||..||||.||||||||..|.|||||..|..
BPUM_2258___g 1023 CAATATTAAGAAGCTTGATAAGGTCGTATTCCATGAGAAACTTGGCACAA 1072
BSNT_03767___ 1073 TTGCTGATAAGGTTAGAAGAGTCAC-ATCAAT----CGC----AG-AGAA 1112
|||..||.|||.|.|..|||||.|| |.||.| ||| || || .
BPUM_2258___g 1073 TTGGCGACAAGCTAAAGAGAGTGACTAACATTGCGACGCGTTTAGCAG-C 1121
BSNT_03767___ 1113 ACTTGCCGTTCGTCTTCAGGCTGATGAAGATACATTAAAACATGTG--AA 1160
||.||.||.| ||.|||||.||.||...|.|.|.|||| ||
BPUM_2258___g 1122 ACATGTCGGT---------GCGGATGAGGAAACGACAGAGCGTGTGGCAA 1162
BSNT_03767___ 1161 GCG-GGCTGCTGAA--ATTTCTAAATTCGACCTTGTGACGCATATGATAT 1207
|.| ||| || |||||.|||||.|||||||||||.||.|||.|.|
BPUM_2258___g 1163 GAGCGGC-----AAGTATTTCGAAATTTGACCTTGTGACTCAAATGGTCT 1207
BSNT_03767___ 1208 ATGAATTCCCTGAACTTCAAGGAATTATGGGCGAAAAGTATGCGAGAATG 1257
||||||||||.|||.|.||||||||.||||||||.||.|||||.|.|...
BPUM_2258___g 1208 ATGAATTCCCAGAATTACAAGGAATCATGGGCGAGAAATATGCAAAAGCA 1257
BSNT_03767___ 1258 CTTGGCGAAGATGAAGCTGTGGCT----GCGGCAGTTAATGAACATTATA 1303
|||||||||.||||||..|||||| || .|.||.||.||.||||
BPUM_2258___g 1258 CTTGGCGAACATGAAGAAGTGGCTAAAAGC----ATCAACGAGCACTATA 1303
BSNT_03767___ 1304 TGCCTAGATCAGCGGGCGGAGAAACGCCTTCTACTTTCACCGGAGCTGTT 1353
||||..|.|..||.||.|..||..|||||||.|||||.|..||.||..||
BPUM_2258___g 1304 TGCCGCGCTTTGCCGGTGATGAGGCGCCTTCCACTTTAATTGGTGCAATT 1353
BSNT_03767___ 1354 GTAGCAATGGCGGATAAGCTTGACACAATCGCTTCATTCTTCTCTATCGG 1403
||.|||||.||.||||||||.||..|.||...|||.||||||||.||.|.
BPUM_2258___g 1354 GTGGCAATAGCCGATAAGCTGGATTCGATTTGTTCCTTCTTCTCAATTGA 1403
BSNT_03767___ 1404 CGTAATTCCGACCGGTTCCCAGGACCCTTACGGACTGCGCCGCCAAGCAA 1453
.||.|||||.|||||.||.||.||.|||||.|||||..|..|.|||||.|
BPUM_2258___g 1404 TGTCATTCCAACCGGCTCTCAAGATCCTTATGGACTAAGAAGACAAGCGA 1453
BSNT_03767___ 1454 GCGGTATTGTTGCGATTCTTCTTGACCGCAACTGGGGAATTTCATTTGAA 1503
|||||||.|||...|||||.|||||.||..|.|||...||||||||..||
BPUM_2258___g 1454 GCGGTATCGTTCAAATTCTGCTTGATCGTCATTGGAATATTTCATTCAAA 1503
BSNT_03767___ 1504 GAGCTGCTT----ACTTTC----GTACAA-----AC-CGATAAAGAAATT 1539
||||| || ||||.| |||.|| || |||
BPUM_2258___g 1504 GAGCT--TTTGGCACTTGCTCAAGTAGAAGAAGCACACGA---------- 1541
BSNT_03767___ 1540 GAACTGC------TGGATTTCTTCACTCAGCGCTTGAAATATGTCTTGAA 1583
|||||| ||.|||| ||.||.||.||.||.|||||||||.|..|
BPUM_2258___g 1542 -AACTGCTCTCATTGAATTT-TTAACACATCGTTTAAAATATGTCCTCCA 1589
BSNT_03767___ 1584 TGCTGAACAAATCAGACATGATGTCATTGACGCCGTGCTGGA-----AAG 1628
.||.||.||.||..|.||||||||..|.||.||.|||||.|| ||
BPUM_2258___g 1590 AGCAGAGCATATTCGTCATGATGTTGTCGATGCAGTGCTAGATGTTGAA- 1638
BSNT_03767___ 1629 CTCTGAGCTTGAGCCGTACTCTGC----GCTGCATAAAGCACAAGTACTG 1674
||..||||.||.|| ||| | ||.|.||||||...||.||.
BPUM_2258___g 1639 ----GATATTGAACCTTA---TGCAGTTG-TGAAAAAAGCAGCTGTTCTT 1680
BSNT_03767___ 1675 GAGCA-AAAGCTTGGTGCACC----TGGCTTTAAGGAAACAGCCGAAGCG 1719
|| | |.||| |||.|.| ..||||.||.||||||||.|||||.
BPUM_2258___g 1681 GA--AGAGAGC---GTGAAACAAGAAAGCTTCAAAGAAACAGCAGAAGCA 1725
BSNT_03767___ 1720 TTAGGCCGAGTGATCTCTATCAGCAAAAAAGGAGTCCGCGGAGACATTCA 1769
|||||.||.||.||.||.|||||.||||||||.|....||.|||.|||||
BPUM_2258___g 1726 TTAGGACGCGTCATTTCAATCAGTAAAAAAGGTGAAGACGCAGAGATTCA 1775
BSNT_03767___ 1770 GCCTGATCTGTTTGAAAATGAATACGAAGCAAAA-CTGTTTGATGCCTAC 1818
||||||.||||||||||||||..|.||| ||||| ||.|.|||.||.||.
BPUM_2258___g 1776 GCCTGAGCTGTTTGAAAATGAGCATGAA-CAAAAGCTATATGAGGCGTAT 1824
BSNT_03767___ 1819 C---------AAACAGC---GAAGCAAAAT----CTGCAGGAAAACTTCA 1852
| |.||||| .|||.||.|| |.|||||..|| |.||
BPUM_2258___g 1825 CAGCAAGTAGAGACAGCCGTCAAGGAACATGTAGCAGCAGGTCAA-TACA 1873
BSNT_03767___ 1853 GCAAAAAAGATTATGAGGCGGCGCTTGCTTCACTTGCAGCCTTAAAAGAA 1902
|| ||.||.||||...||||||...|.||||||..|
BPUM_2258___g 1874 GC---------------GCAGCACTTGAGGCACTTGATACGTTAAAAACA 1908
BSNT_03767___ 1903 CCGATCGATGCTTACTTCGATCATACAATGGTT-ATAGCGGATAATGAGT 1951
|||||.|.|..|||.||||||||.||||||||| || ||.|||.||||
BPUM_2258___g 1909 CCGATTGTTCATTATTTCGATCACACAATGGTTCAT-GCAGATGATGA-- 1955
BSNT_03767___ 1952 CATTAAAG-----GC-AAATCGTTTAGCGCAAATGGT-AAGCTTGGCGGA 1994
|||| || |||||||||.||.|||||||| ||.||
BPUM_2258___g 1956 ----AAAGCTGAAGCGAAATCGTTTGGCACAAATGGTCAAACT------- 1994
BSNT_03767___ 1995 TGAGATCAAG--------TCCTTTGCGAATATGAATGCCCTT--ATTGTA 2034
||.|.||| ||.|||||||||||||| |..|| ||||||
BPUM_2258___g 1995 --AGCTAAAGTCATTCAATCATTTGCGAATATGAA--CAATTTAATTGTA 2040
BSNT_03767___ 2035 AAATAA 2040
||||||
BPUM_2258___g 2041 AAATAA 2046
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.