Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03760 and BPUM_2254

See Amino acid alignment / Visit BSNT_03760 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:17
# Commandline: needle
#    -asequence dna-align/BSNT_03760___dnaG.1.24716.seq
#    -bsequence dna-align/BPUM_2254___dnaG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03760___dnaG-BPUM_2254___dnaG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03760___dnaG-BPUM_2254___dnaG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03760___dnaG
# 2: BPUM_2254___dnaG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1864
# Identity:    1321/1864 (70.9%)
# Similarity:  1321/1864 (70.9%)
# Gaps:          86/1864 ( 4.6%)
# Score: 4420.5
# 
#
#=======================================

BSNT_03760___      1 ATGGGAAATCGGATACCAGATGAAATTGTGGATCAGGTGCAAAAGTCGGC     50
                     |||.|.||.||.||||||||||||.||.||||.||..|.|||||....||
BPUM_2254___d      1 ATGAGCAAACGTATACCAGATGAACTTTTGGAGCAAATCCAAAAAAACGC     50

BSNT_03760___     51 AGATATCGTTGAAGTCATAGGTGATTATGTTCA-ATTAAAGAAGCAAGGC     99
                     |||.||.||.|||||.||.||.||.||.||.|| .|||.| ||||||||.
BPUM_2254___d     51 AGACATTGTCGAAGTGATTGGAGAATACGTACAGCTTAGA-AAGCAAGGT     99

BSNT_03760___    100 CGAAACTACTTTGGACTCTGTCCTTTTCATGGAGAAAGCACACCTTCGTT    149
                     |||||.|||||.||.||.|||||.||.|||||.||||..||.|||||.||
BPUM_2254___d    100 CGAAATTACTTCGGTCTTTGTCCATTCCATGGTGAAAATACTCCTTCATT    149

BSNT_03760___    150 TTCCGTATCGCCCGACAAACAGATTTTTCATTGCTTTGGCTGCGGAGCGG    199
                     .||.||.||..|.||.||.||.||.||.|||||.||||||||.||.||.|
BPUM_2254___d    150 CTCTGTTTCAGCAGATAAGCAAATCTTCCATTGTTTTGGCTGTGGTGCAG    199

BSNT_03760___    200 GCGGCAATGTTTTCTCTTTTTTAAGGCAGATGGAAGGCTATTCTTTTGCC    249
                     |.||.|||||.||.||.||..|.||.||.|||||||||||.||.|||...
BPUM_2254___d    200 GAGGTAATGTATTTTCGTTCCTCAGACAAATGGAAGGCTACTCATTTATT    249

BSNT_03760___    250 GAGTCGGTTTCTCACCTTGCTGACAAATACCAAATTGATTTTCCAGATGA    299
                     ||..|.|||||.||..|||||||.||.|||||.||||||||.||.|||.|
BPUM_2254___d    250 GAAGCCGTTTCACATGTTGCTGATAAGTACCATATTGATTTGCCTGATCA    299

BSNT_03760___    300 TATAACAGTCCATTCCGGAG----------CCCGGCCAGAGTCTTCTGGA    339
                     |.||.||    |.|.|..||          |.|..|.||||....|.|.|
BPUM_2254___d    300 TGTAGCA----AATGCTCAGATCAGCTCCTCACATCAAGAGGACACAGCA    345

BSNT_03760___    340 GAACAAAAAATGGCTGAGGCACATGAGCTCCTGAAGAAATTTTACCATCA    389
                     ||.||.||||||..|||.||.||||||||.||.||||||||||||||.||
BPUM_2254___d    346 GATCATAAAATGATTGAAGCGCATGAGCTTCTTAAGAAATTTTACCACCA    395

BSNT_03760___    390 TTTGTTAATAAATACAAAAGAAGGTCAAGAGGCACTGGATTATCTGCTTT    439
                     ||||.|..||||||||||.|||||||||.|.|||||.||||||.|.|...
BPUM_2254___d    396 TTTGCTGGTAAATACAAAGGAAGGTCAAAACGCACTCGATTATTTACGGG    445

BSNT_03760___    440 CTAGGGGCTTTAC----GAAAGAGCTGATTGATGAATTTCAGATTGGCTA    485
                     |.||.||||||||    ||||.|    ||||...|.|||.||||.||.||
BPUM_2254___d    446 CGAGAGGCTTTACAGATGAAACA----ATTGCCAAGTTTGAGATCGGATA    491

BSNT_03760___    486 TGCTCTTGATTCTTGGGACTTTATTACGAAATTCCTTGTAAA--GAGGG-    532
                     |||||||||.||||||||.||..|.||.||.||..|.|.|||  ||||| 
BPUM_2254___d    492 TGCTCTTGACTCTTGGGATTTCGTGACCAAGTTTTTAGAAAAACGAGGGT    541

BSNT_03760___    533 --GATTTAGTGAGGCACAAATGGAAAAAGCGGGTCTCCTGA-TCAGACGC    579
                       |||...|.||.|     ||||||||.||.|||||..||| ||| |||.
BPUM_2254___d    542 TTGATCCTGCGATG-----ATGGAAAAGGCCGGTCTTTTGATTCA-ACGT    585

BSNT_03760___    580 GAAGACGGAAGCGGATATTTCGACCGCTTCAGAAACCGTGTCATGTTTCC    629
                     |||.||||||..||.|.|||.||||||||.||..|.|||||.||||||||
BPUM_2254___d    586 GAAAACGGAACAGGCTTTTTTGACCGCTTTAGGGATCGTGTGATGTTTCC    635

BSNT_03760___    630 GATCCATGATCATCACGGGGCTGTTGTTGCTTTCTCAGGCAGGGCTCTTG    679
                     .||.|||||||||||.|||.|.||.||.|||||.||.||.||..|.||||
BPUM_2254___d    636 TATTCATGATCATCATGGGACAGTCGTCGCTTTTTCCGGAAGATCACTTG    685

BSNT_03760___    680 GCAGCCAGCAGCCTAAGTATATGAACAGTCCTGAAACCCCGCTCTTTCAT    729
                     |....||||||||.|||||||||||.|||||||||||.||.||.||||||
BPUM_2254___d    686 GTGATCAGCAGCCCAAGTATATGAATAGTCCTGAAACGCCACTTTTTCAT    735

BSNT_03760___    730 AAAAGTAAACTGCTTTACAATTTTTATAAGGCCCGCCTTCATATCAGAAA    779
                     ||||||||.||||||||..|.|||.||.|.||.||..|.|||||..||||
BPUM_2254___d    736 AAAAGTAAGCTGCTTTATCACTTTCATGACGCGCGTATGCATATTCGAAA    785

BSNT_03760___    780 GCAGGAAAGAGCAG-TCTTATTTGAAGGGTTTGCTGATGTCATATCGGCC    828
                     .|..|||.|.||.| |||| ||||||||.||||||||.|||||.||.||.
BPUM_2254___d    786 ACGCGAACGTGCGGTTCTT-TTTGAAGGATTTGCTGACGTCATCTCAGCT    834

BSNT_03760___    829 GTAAGCTCGGGTGTAAAAGAAAGCATAGCCACGATGGGAACGTCTCTTAC    878
                     ||.|..||.|||||....|||||..|.||.||.||||||||||||||.||
BPUM_2254___d    835 GTCACATCAGGTGTCGGCGAAAGTGTTGCAACAATGGGAACGTCTCTAAC    884

BSNT_03760___    879 AGATGATCATGTCAAGATCTTGAGAAGAAACGTCGAAGAAATCATTCTTT    928
                     |||.||.||.||.||..|..|.|||.|.|||||.|||||.||.|||||||
BPUM_2254___d    885 AGAAGAGCACGTGAAACTTCTCAGACGGAACGTAGAAGAGATTATTCTTT    934

BSNT_03760___    929 GCTATGACTCTGATAAAGCCGGTTATGAAGCCACCTTAAAAGCTTCGGAG    978
                     |||||||||||||.|..||||||||||||||||||.|.|||||.||.||.
BPUM_2254___d    935 GCTATGACTCTGACACGGCCGGTTATGAAGCCACCATGAAAGCATCAGAT    984

BSNT_03760___    979 CTTCTGCAAAAAAAAGGCTGCAAAGTCAGAGTTGCAATGATTCCTGACGG   1028
                     .|.||...|||||.|||.||.|||||..|.|||||.|||||.||.||.||
BPUM_2254___d    985 TTGCTTGGAAAAAGAGGATGTAAAGTTCGCGTTGCCATGATACCAGATGG   1034

BSNT_03760___   1029 ATTGGACCCTGATGATTACATCAAAAAATTCGGCGGGGAAAAATTTAAAA   1078
                     |.|.||.||.|||||||||||....||||..|||||.||.|||||||..|
BPUM_2254___d   1035 ACTTGATCCAGATGATTACATTCGTAAATATGGCGGCGAGAAATTTAGGA   1084

BSNT_03760___   1079 ACGACATTATTGACGCCAGTGTCACCGTAATGGCGTTCAAAATGCAATAT   1128
                     |.|||||.||.||.||.||.||.||..|||||.|.||.||.|||.|.|.|
BPUM_2254___d   1085 ATGACATCATAGATGCAAGCGTGACATTAATGACTTTTAAGATGAACTTT   1134

BSNT_03760___   1129 TTCCGAAAAGGAAAGAACCTGTCCGATGAAGGCGACCGACTAGCTTACAT   1178
                     |||||||..||||||||..|.||.||||||||.|||||.||..||||.||
BPUM_2254___d   1135 TTCCGAAGGGGAAAGAATTTATCTGATGAAGGGGACCGGCTTTCTTATAT   1184

BSNT_03760___   1179 TAAAGACGTACTGAAAGAAATCAGCACGCTTTCAGGGTCTC--TAGAGCA   1226
                     .||..|.|||||...||||||.||| ||.||..|.||| ||  |.||.||
BPUM_2254___d   1185 GAAGCAGGTACTCCGAGAAATTAGC-CGGTTAAACGGT-TCCTTGGAACA   1232

BSNT_03760___   1227 GGAAGTCTATGTAAAGCAGCTTGCTTCAGAGTTTTCGCTTTCACAGGAGT   1276
                     .||..|.||..|.||.|||||||||..||||||.|||.|.||||..||.|
BPUM_2254___d   1233 AGAGATTTACATGAAACAGCTTGCTGGAGAGTTCTCGATCTCACTTGATT   1282

BSNT_03760___   1277 CTTTAACTGAGCAGCTG--TCTGTTT-----TCAGCA--------AG--C   1309
                     |.||||..||.||.|||  .||||||     .|||||        ||  |
BPUM_2254___d   1283 CATTAAAGGAACAACTGGAGCTGTTTGAAAAACAGCAGCGTCAAGAGGCC   1332

BSNT_03760___   1310 AAAACAAACCTGCTGACAATAGCGG---TGAAACAAAAACGCGGCGAGCG   1356
                     ||||..|..|.|  ||..|.|||||   |||||.|      |||||.||.
BPUM_2254___d   1333 AAAAGCACGCAG--GAAGAAAGCGGGCTTGAAAAA------CGGCGTGCA   1374

BSNT_03760___   1357 CATCTGACAACAAAAGCAAGGCAAAAACGTTTGCGTCCGGCGTATGAAAA   1406
                     ||||||.|||||.|||.|.|...|||||||.||||.||.||.||||||||
BPUM_2254___d   1375 CATCTGTCAACACAAGTACGAAGAAAACGTCTGCGCCCAGCATATGAAAA   1424

BSNT_03760___   1407 TGCAGAAAGGCTGCTACTCGCTCACATGCTTCGAGATCG--GAGCGTCAT   1454
                     ||||||..|..||||.||.|||||.||| ||..|.|.||  || |||.||
BPUM_2254___d   1425 TGCAGAGCGAATGCTGCTTGCTCATATG-TTAAAAAGCGATGA-CGTGAT   1472

BSNT_03760___   1455 CAAAAAAGTGATTGACCGGGTAGGGTTTCAATTTAATATTGATGAGCACC   1504
                     |...|||||..|.|||.|.||||||.||.||||||||||.|||...|||.
BPUM_2254___d   1473 CCGTAAAGTACTGGACAGAGTAGGGATTGAATTTAATATAGATTCTCACA   1522

BSNT_03760___   1505 GGGCATTAGCCGCCTATCTTTATGCTTTTTATGAAGAGGGAGCCGAGCTG   1554
                     ||||..|.|||.|.||..||||.|||||.||||||||.||....||.|..
BPUM_2254___d   1523 GGGCGCTTGCCACATACATTTACGCTTTGTATGAAGAAGGCAAAGAACCA   1572

BSNT_03760___   1555 ACGCCTCAGCATCTGATGGCCAGGGT-GACGGATGA--TCAT--ATAAGC   1599
                     |||||.|||||.||||||..|.|..| || .|||||  ||||  ||    
BPUM_2254___d   1573 ACGCCGCAGCACCTGATGAACCGTATAGA-AGATGATGTCATCAAT----   1617

BSNT_03760___   1600 CAGCTCTTGTCTGATATATTAATGCTTCAGGTTAATCAAGAGCTTAGTGA   1649
                     |||||..||.|.||||||||.|||.||||.|||....|.||.||.|||||
BPUM_2254___d   1618 CAGCTTCTGACAGATATATTCATGATTCAAGTTGGAGACGAACTGAGTGA   1667

BSNT_03760___   1650 AGCCGAGTTATCAGATTATGTAAAAAAAGTGTTGAATCAAAGAAATTGGT   1699
                     |||.||.|||...||||||||||||||||||||||||||..|.||||.||
BPUM_2254___d   1668 AGCTGAATTAAGTGATTATGTAAAAAAAGTGTTGAATCATCGGAATTTGT   1717

BSNT_03760___   1700 CAATGATAAAAGAAAAAGAGGCGGAAAGAGCCGAAGCCGAAAGGCAAAAA   1749
                     ||||||||||.||||||||....|||.|.||.|||||.||.|||||||||
BPUM_2254___d   1718 CAATGATAAAGGAAAAAGAACTAGAACGTGCAGAAGCGGAGAGGCAAAAA   1767

BSNT_03760___   1750 GATTTTTTAAGAGCTGCTTCTCTGGCTCAAGAAATCGTTACA-TTGAACC   1798
                     |||||.||.|.|||.||..|.||.||..|||||||..|| || |||||||
BPUM_2254___d   1768 GATTTCTTCAAAGCGGCAACACTTGCAAAAGAAATTATT-CAGTTGAACC   1816

BSNT_03760___   1799 GATCTTTAAAATAA   1812
                     |.||..|.||.|||
BPUM_2254___d   1817 GTTCGCTGAAGTAA   1830


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