Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03760 and BPUM_2254
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:17
# Commandline: needle
# -asequence dna-align/BSNT_03760___dnaG.1.24716.seq
# -bsequence dna-align/BPUM_2254___dnaG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03760___dnaG-BPUM_2254___dnaG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03760___dnaG-BPUM_2254___dnaG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03760___dnaG
# 2: BPUM_2254___dnaG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1864
# Identity: 1321/1864 (70.9%)
# Similarity: 1321/1864 (70.9%)
# Gaps: 86/1864 ( 4.6%)
# Score: 4420.5
#
#
#=======================================
BSNT_03760___ 1 ATGGGAAATCGGATACCAGATGAAATTGTGGATCAGGTGCAAAAGTCGGC 50
|||.|.||.||.||||||||||||.||.||||.||..|.|||||....||
BPUM_2254___d 1 ATGAGCAAACGTATACCAGATGAACTTTTGGAGCAAATCCAAAAAAACGC 50
BSNT_03760___ 51 AGATATCGTTGAAGTCATAGGTGATTATGTTCA-ATTAAAGAAGCAAGGC 99
|||.||.||.|||||.||.||.||.||.||.|| .|||.| ||||||||.
BPUM_2254___d 51 AGACATTGTCGAAGTGATTGGAGAATACGTACAGCTTAGA-AAGCAAGGT 99
BSNT_03760___ 100 CGAAACTACTTTGGACTCTGTCCTTTTCATGGAGAAAGCACACCTTCGTT 149
|||||.|||||.||.||.|||||.||.|||||.||||..||.|||||.||
BPUM_2254___d 100 CGAAATTACTTCGGTCTTTGTCCATTCCATGGTGAAAATACTCCTTCATT 149
BSNT_03760___ 150 TTCCGTATCGCCCGACAAACAGATTTTTCATTGCTTTGGCTGCGGAGCGG 199
.||.||.||..|.||.||.||.||.||.|||||.||||||||.||.||.|
BPUM_2254___d 150 CTCTGTTTCAGCAGATAAGCAAATCTTCCATTGTTTTGGCTGTGGTGCAG 199
BSNT_03760___ 200 GCGGCAATGTTTTCTCTTTTTTAAGGCAGATGGAAGGCTATTCTTTTGCC 249
|.||.|||||.||.||.||..|.||.||.|||||||||||.||.|||...
BPUM_2254___d 200 GAGGTAATGTATTTTCGTTCCTCAGACAAATGGAAGGCTACTCATTTATT 249
BSNT_03760___ 250 GAGTCGGTTTCTCACCTTGCTGACAAATACCAAATTGATTTTCCAGATGA 299
||..|.|||||.||..|||||||.||.|||||.||||||||.||.|||.|
BPUM_2254___d 250 GAAGCCGTTTCACATGTTGCTGATAAGTACCATATTGATTTGCCTGATCA 299
BSNT_03760___ 300 TATAACAGTCCATTCCGGAG----------CCCGGCCAGAGTCTTCTGGA 339
|.||.|| |.|.|..|| |.|..|.||||....|.|.|
BPUM_2254___d 300 TGTAGCA----AATGCTCAGATCAGCTCCTCACATCAAGAGGACACAGCA 345
BSNT_03760___ 340 GAACAAAAAATGGCTGAGGCACATGAGCTCCTGAAGAAATTTTACCATCA 389
||.||.||||||..|||.||.||||||||.||.||||||||||||||.||
BPUM_2254___d 346 GATCATAAAATGATTGAAGCGCATGAGCTTCTTAAGAAATTTTACCACCA 395
BSNT_03760___ 390 TTTGTTAATAAATACAAAAGAAGGTCAAGAGGCACTGGATTATCTGCTTT 439
||||.|..||||||||||.|||||||||.|.|||||.||||||.|.|...
BPUM_2254___d 396 TTTGCTGGTAAATACAAAGGAAGGTCAAAACGCACTCGATTATTTACGGG 445
BSNT_03760___ 440 CTAGGGGCTTTAC----GAAAGAGCTGATTGATGAATTTCAGATTGGCTA 485
|.||.|||||||| ||||.| ||||...|.|||.||||.||.||
BPUM_2254___d 446 CGAGAGGCTTTACAGATGAAACA----ATTGCCAAGTTTGAGATCGGATA 491
BSNT_03760___ 486 TGCTCTTGATTCTTGGGACTTTATTACGAAATTCCTTGTAAA--GAGGG- 532
|||||||||.||||||||.||..|.||.||.||..|.|.||| |||||
BPUM_2254___d 492 TGCTCTTGACTCTTGGGATTTCGTGACCAAGTTTTTAGAAAAACGAGGGT 541
BSNT_03760___ 533 --GATTTAGTGAGGCACAAATGGAAAAAGCGGGTCTCCTGA-TCAGACGC 579
|||...|.||.| ||||||||.||.|||||..||| ||| |||.
BPUM_2254___d 542 TTGATCCTGCGATG-----ATGGAAAAGGCCGGTCTTTTGATTCA-ACGT 585
BSNT_03760___ 580 GAAGACGGAAGCGGATATTTCGACCGCTTCAGAAACCGTGTCATGTTTCC 629
|||.||||||..||.|.|||.||||||||.||..|.|||||.||||||||
BPUM_2254___d 586 GAAAACGGAACAGGCTTTTTTGACCGCTTTAGGGATCGTGTGATGTTTCC 635
BSNT_03760___ 630 GATCCATGATCATCACGGGGCTGTTGTTGCTTTCTCAGGCAGGGCTCTTG 679
.||.|||||||||||.|||.|.||.||.|||||.||.||.||..|.||||
BPUM_2254___d 636 TATTCATGATCATCATGGGACAGTCGTCGCTTTTTCCGGAAGATCACTTG 685
BSNT_03760___ 680 GCAGCCAGCAGCCTAAGTATATGAACAGTCCTGAAACCCCGCTCTTTCAT 729
|....||||||||.|||||||||||.|||||||||||.||.||.||||||
BPUM_2254___d 686 GTGATCAGCAGCCCAAGTATATGAATAGTCCTGAAACGCCACTTTTTCAT 735
BSNT_03760___ 730 AAAAGTAAACTGCTTTACAATTTTTATAAGGCCCGCCTTCATATCAGAAA 779
||||||||.||||||||..|.|||.||.|.||.||..|.|||||..||||
BPUM_2254___d 736 AAAAGTAAGCTGCTTTATCACTTTCATGACGCGCGTATGCATATTCGAAA 785
BSNT_03760___ 780 GCAGGAAAGAGCAG-TCTTATTTGAAGGGTTTGCTGATGTCATATCGGCC 828
.|..|||.|.||.| |||| ||||||||.||||||||.|||||.||.||.
BPUM_2254___d 786 ACGCGAACGTGCGGTTCTT-TTTGAAGGATTTGCTGACGTCATCTCAGCT 834
BSNT_03760___ 829 GTAAGCTCGGGTGTAAAAGAAAGCATAGCCACGATGGGAACGTCTCTTAC 878
||.|..||.|||||....|||||..|.||.||.||||||||||||||.||
BPUM_2254___d 835 GTCACATCAGGTGTCGGCGAAAGTGTTGCAACAATGGGAACGTCTCTAAC 884
BSNT_03760___ 879 AGATGATCATGTCAAGATCTTGAGAAGAAACGTCGAAGAAATCATTCTTT 928
|||.||.||.||.||..|..|.|||.|.|||||.|||||.||.|||||||
BPUM_2254___d 885 AGAAGAGCACGTGAAACTTCTCAGACGGAACGTAGAAGAGATTATTCTTT 934
BSNT_03760___ 929 GCTATGACTCTGATAAAGCCGGTTATGAAGCCACCTTAAAAGCTTCGGAG 978
|||||||||||||.|..||||||||||||||||||.|.|||||.||.||.
BPUM_2254___d 935 GCTATGACTCTGACACGGCCGGTTATGAAGCCACCATGAAAGCATCAGAT 984
BSNT_03760___ 979 CTTCTGCAAAAAAAAGGCTGCAAAGTCAGAGTTGCAATGATTCCTGACGG 1028
.|.||...|||||.|||.||.|||||..|.|||||.|||||.||.||.||
BPUM_2254___d 985 TTGCTTGGAAAAAGAGGATGTAAAGTTCGCGTTGCCATGATACCAGATGG 1034
BSNT_03760___ 1029 ATTGGACCCTGATGATTACATCAAAAAATTCGGCGGGGAAAAATTTAAAA 1078
|.|.||.||.|||||||||||....||||..|||||.||.|||||||..|
BPUM_2254___d 1035 ACTTGATCCAGATGATTACATTCGTAAATATGGCGGCGAGAAATTTAGGA 1084
BSNT_03760___ 1079 ACGACATTATTGACGCCAGTGTCACCGTAATGGCGTTCAAAATGCAATAT 1128
|.|||||.||.||.||.||.||.||..|||||.|.||.||.|||.|.|.|
BPUM_2254___d 1085 ATGACATCATAGATGCAAGCGTGACATTAATGACTTTTAAGATGAACTTT 1134
BSNT_03760___ 1129 TTCCGAAAAGGAAAGAACCTGTCCGATGAAGGCGACCGACTAGCTTACAT 1178
|||||||..||||||||..|.||.||||||||.|||||.||..||||.||
BPUM_2254___d 1135 TTCCGAAGGGGAAAGAATTTATCTGATGAAGGGGACCGGCTTTCTTATAT 1184
BSNT_03760___ 1179 TAAAGACGTACTGAAAGAAATCAGCACGCTTTCAGGGTCTC--TAGAGCA 1226
.||..|.|||||...||||||.||| ||.||..|.||| || |.||.||
BPUM_2254___d 1185 GAAGCAGGTACTCCGAGAAATTAGC-CGGTTAAACGGT-TCCTTGGAACA 1232
BSNT_03760___ 1227 GGAAGTCTATGTAAAGCAGCTTGCTTCAGAGTTTTCGCTTTCACAGGAGT 1276
.||..|.||..|.||.|||||||||..||||||.|||.|.||||..||.|
BPUM_2254___d 1233 AGAGATTTACATGAAACAGCTTGCTGGAGAGTTCTCGATCTCACTTGATT 1282
BSNT_03760___ 1277 CTTTAACTGAGCAGCTG--TCTGTTT-----TCAGCA--------AG--C 1309
|.||||..||.||.||| .|||||| .||||| || |
BPUM_2254___d 1283 CATTAAAGGAACAACTGGAGCTGTTTGAAAAACAGCAGCGTCAAGAGGCC 1332
BSNT_03760___ 1310 AAAACAAACCTGCTGACAATAGCGG---TGAAACAAAAACGCGGCGAGCG 1356
||||..|..|.| ||..|.||||| |||||.| |||||.||.
BPUM_2254___d 1333 AAAAGCACGCAG--GAAGAAAGCGGGCTTGAAAAA------CGGCGTGCA 1374
BSNT_03760___ 1357 CATCTGACAACAAAAGCAAGGCAAAAACGTTTGCGTCCGGCGTATGAAAA 1406
||||||.|||||.|||.|.|...|||||||.||||.||.||.||||||||
BPUM_2254___d 1375 CATCTGTCAACACAAGTACGAAGAAAACGTCTGCGCCCAGCATATGAAAA 1424
BSNT_03760___ 1407 TGCAGAAAGGCTGCTACTCGCTCACATGCTTCGAGATCG--GAGCGTCAT 1454
||||||..|..||||.||.|||||.||| ||..|.|.|| || |||.||
BPUM_2254___d 1425 TGCAGAGCGAATGCTGCTTGCTCATATG-TTAAAAAGCGATGA-CGTGAT 1472
BSNT_03760___ 1455 CAAAAAAGTGATTGACCGGGTAGGGTTTCAATTTAATATTGATGAGCACC 1504
|...|||||..|.|||.|.||||||.||.||||||||||.|||...|||.
BPUM_2254___d 1473 CCGTAAAGTACTGGACAGAGTAGGGATTGAATTTAATATAGATTCTCACA 1522
BSNT_03760___ 1505 GGGCATTAGCCGCCTATCTTTATGCTTTTTATGAAGAGGGAGCCGAGCTG 1554
||||..|.|||.|.||..||||.|||||.||||||||.||....||.|..
BPUM_2254___d 1523 GGGCGCTTGCCACATACATTTACGCTTTGTATGAAGAAGGCAAAGAACCA 1572
BSNT_03760___ 1555 ACGCCTCAGCATCTGATGGCCAGGGT-GACGGATGA--TCAT--ATAAGC 1599
|||||.|||||.||||||..|.|..| || .||||| |||| ||
BPUM_2254___d 1573 ACGCCGCAGCACCTGATGAACCGTATAGA-AGATGATGTCATCAAT---- 1617
BSNT_03760___ 1600 CAGCTCTTGTCTGATATATTAATGCTTCAGGTTAATCAAGAGCTTAGTGA 1649
|||||..||.|.||||||||.|||.||||.|||....|.||.||.|||||
BPUM_2254___d 1618 CAGCTTCTGACAGATATATTCATGATTCAAGTTGGAGACGAACTGAGTGA 1667
BSNT_03760___ 1650 AGCCGAGTTATCAGATTATGTAAAAAAAGTGTTGAATCAAAGAAATTGGT 1699
|||.||.|||...||||||||||||||||||||||||||..|.||||.||
BPUM_2254___d 1668 AGCTGAATTAAGTGATTATGTAAAAAAAGTGTTGAATCATCGGAATTTGT 1717
BSNT_03760___ 1700 CAATGATAAAAGAAAAAGAGGCGGAAAGAGCCGAAGCCGAAAGGCAAAAA 1749
||||||||||.||||||||....|||.|.||.|||||.||.|||||||||
BPUM_2254___d 1718 CAATGATAAAGGAAAAAGAACTAGAACGTGCAGAAGCGGAGAGGCAAAAA 1767
BSNT_03760___ 1750 GATTTTTTAAGAGCTGCTTCTCTGGCTCAAGAAATCGTTACA-TTGAACC 1798
|||||.||.|.|||.||..|.||.||..|||||||..|| || |||||||
BPUM_2254___d 1768 GATTTCTTCAAAGCGGCAACACTTGCAAAAGAAATTATT-CAGTTGAACC 1816
BSNT_03760___ 1799 GATCTTTAAAATAA 1812
|.||..|.||.|||
BPUM_2254___d 1817 GTTCGCTGAAGTAA 1830
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