Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03756 and BPUM_2252
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:17
# Commandline: needle
# -asequence dna-align/BSNT_03756___cccA.1.24716.seq
# -bsequence dna-align/BPUM_2252___cccA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03756___cccA-BPUM_2252___cccA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03756___cccA-BPUM_2252___cccA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03756___cccA
# 2: BPUM_2252___cccA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 378
# Identity: 216/378 (57.1%)
# Similarity: 216/378 (57.1%)
# Gaps: 105/378 (27.8%)
# Score: 643.5
#
#
#=======================================
BSNT_03756___ 1 ATGAAATGGAACCCGCTTATTCCATTTTTGATGATCGCTGTTTTAGGAAT 50
|||| |||..|
BPUM_2252___c 1 ------------------------------ATGA----------AGGGGT 10
BSNT_03756___ 51 TGGTCTAACTTTCTTTTTATCAGTAAAAGGACTTGATGAC-------TCT 93
|| |||| .|||.||| .||
BPUM_2252___c 11 TG-----------------------AAAG---ATGAAGACAAAATCGCCT 34
BSNT_03756___ 94 CGGGAGATTGCAAGCGGAGGAG--AAAGCAAATCTGCTGAAAAGAAAGAT 141
|.|||| || |||||| |||||| |.||||||.|
BPUM_2252___c 35 CTGGAG-------GC-GAGGAGCAAAAGCA---------AGAAGAAACA- 66
BSNT_03756___ 142 GCAAACGCTTCACCAGAAGAAATTTACAAGGCA-AACTGCATC---GCAT 187
|||||.||..|.||.||||||.|.||.|| .|| ||||| || || |
BPUM_2252___c 67 GCAAATGCGACGCCGGAAGAATTGTATAA-ACAGAACTG--TCTAAGC-T 112
BSNT_03756___ 188 GCCACGGTGAAAATTATGAAGGCGTTTCGGGTCCGAGC-TTAAAGGGTGT 236
|.|||||.|||||.||||||||||.|.|.||||| .|| |||||.|||||
BPUM_2252___c 113 GTCACGGGGAAAACTATGAAGGCGGTGCAGGTCC-TGCATTAAAAGGTGT 161
BSNT_03756___ 237 AGGGGATAAGAAAGATGTCGCTGAAATTAA-AACAAAGATCGAAAAAGGC 285
.||.||.|||...||.||.||.||.||||| ||.||| ||..||.|||||
BPUM_2252___c 162 TGGAGACAAGCTTGAAGTAGCAGACATTAAGAAGAAA-ATTCAAGAAGGC 210
BSNT_03756___ 286 GGTAATGGAATGCCTTCCGGTCTTGTTCCGGCCGATAAGCTGGATGATAT 335
||.||.||.|||||..||||.||..|.|||...||.|||||.|||||.||
BPUM_2252___c 211 GGCAACGGGATGCCAGCCGGGCTAATCCCGAATGAAAAGCTCGATGAAAT 260
BSNT_03756___ 336 GGCAGAGTGGGTATCAAAAATTAAATAA 363
|.||||.||||||||.||||||||||||
BPUM_2252___c 261 GTCAGAATGGGTATCCAAAATTAAATAA 288
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