Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03756 and BPUM_2252

See Amino acid alignment / Visit BSNT_03756 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:17
# Commandline: needle
#    -asequence dna-align/BSNT_03756___cccA.1.24716.seq
#    -bsequence dna-align/BPUM_2252___cccA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03756___cccA-BPUM_2252___cccA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03756___cccA-BPUM_2252___cccA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03756___cccA
# 2: BPUM_2252___cccA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 378
# Identity:     216/378 (57.1%)
# Similarity:   216/378 (57.1%)
# Gaps:         105/378 (27.8%)
# Score: 643.5
# 
#
#=======================================

BSNT_03756___      1 ATGAAATGGAACCCGCTTATTCCATTTTTGATGATCGCTGTTTTAGGAAT     50
                                                   ||||          |||..|
BPUM_2252___c      1 ------------------------------ATGA----------AGGGGT     10

BSNT_03756___     51 TGGTCTAACTTTCTTTTTATCAGTAAAAGGACTTGATGAC-------TCT     93
                     ||                       ||||   .|||.|||       .||
BPUM_2252___c     11 TG-----------------------AAAG---ATGAAGACAAAATCGCCT     34

BSNT_03756___     94 CGGGAGATTGCAAGCGGAGGAG--AAAGCAAATCTGCTGAAAAGAAAGAT    141
                     |.||||       || ||||||  ||||||         |.||||||.| 
BPUM_2252___c     35 CTGGAG-------GC-GAGGAGCAAAAGCA---------AGAAGAAACA-     66

BSNT_03756___    142 GCAAACGCTTCACCAGAAGAAATTTACAAGGCA-AACTGCATC---GCAT    187
                     |||||.||..|.||.||||||.|.||.|| .|| |||||  ||   || |
BPUM_2252___c     67 GCAAATGCGACGCCGGAAGAATTGTATAA-ACAGAACTG--TCTAAGC-T    112

BSNT_03756___    188 GCCACGGTGAAAATTATGAAGGCGTTTCGGGTCCGAGC-TTAAAGGGTGT    236
                     |.|||||.|||||.||||||||||.|.|.||||| .|| |||||.|||||
BPUM_2252___c    113 GTCACGGGGAAAACTATGAAGGCGGTGCAGGTCC-TGCATTAAAAGGTGT    161

BSNT_03756___    237 AGGGGATAAGAAAGATGTCGCTGAAATTAA-AACAAAGATCGAAAAAGGC    285
                     .||.||.|||...||.||.||.||.||||| ||.||| ||..||.|||||
BPUM_2252___c    162 TGGAGACAAGCTTGAAGTAGCAGACATTAAGAAGAAA-ATTCAAGAAGGC    210

BSNT_03756___    286 GGTAATGGAATGCCTTCCGGTCTTGTTCCGGCCGATAAGCTGGATGATAT    335
                     ||.||.||.|||||..||||.||..|.|||...||.|||||.|||||.||
BPUM_2252___c    211 GGCAACGGGATGCCAGCCGGGCTAATCCCGAATGAAAAGCTCGATGAAAT    260

BSNT_03756___    336 GGCAGAGTGGGTATCAAAAATTAAATAA    363
                     |.||||.||||||||.||||||||||||
BPUM_2252___c    261 GTCAGAATGGGTATCCAAAATTAAATAA    288


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