Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03746 and BPUM_2246
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:17
# Commandline: needle
# -asequence dna-align/BSNT_03746___yqfS.1.24716.seq
# -bsequence dna-align/BPUM_2246___nfo.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03746___yqfS-BPUM_2246___nfo.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03746___yqfS-BPUM_2246___nfo.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03746___yqfS
# 2: BPUM_2246___nfo
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 908
# Identity: 689/908 (75.9%)
# Similarity: 689/908 (75.9%)
# Gaps: 58/908 ( 6.4%)
# Score: 2622.5
#
#
#=======================================
BSNT_03746___ 1 ------------------------ATGAGCGGAAAACATATGCTTCTGGC 26
|||||||||||||||||||||||.||
BPUM_2246___n 1 TTGAAGATTGGTTCACATGTATCCATGAGCGGAAAACATATGCTTCTTGC 50
BSNT_03746___ 27 TGCAAGCCAGGAAGCAGTCTCTTATGGGGCGAATACGTTTATGATCTATA 76
.||.||.||.|||||.|.|||||||||..||||||||||||||||.||||
BPUM_2246___n 51 AGCGAGTCAAGAAGCTGCCTCTTATGGTTCGAATACGTTTATGATTTATA 100
BSNT_03746___ 77 CAGGCGCACCGCAAAATACGCGCCGAAAGAAAATTGAAGACTTAAATATA 126
||||.||||||||||||||||||||.||.||||||||||||.|.|||||.
BPUM_2246___n 101 CAGGTGCACCGCAAAATACGCGCCGTAAAAAAATTGAAGACCTCAATATT 150
BSNT_03746___ 127 GAAGCAGGCCGGGCACATATGCAAGAAAACGGCAT----TGAC-GAGATT 171
|||||.||.|..||.||||||.|||| |||| |||| ||.||.
BPUM_2246___n 151 GAAGCTGGACAAGCGCATATGAAAGA-----GCATGGTATGACAGATATC 195
BSNT_03746___ 172 ATCGTACACGCGCCTTATATTATTAATATTGGCAACA-CGACAAATCCGT 220
.||||.||.||.||.|||||||||||||||||.|||| ||.| |||||..
BPUM_2246___n 196 GTCGTCCATGCACCATATATTATTAATATTGGGAACACCGTC-AATCCTG 244
BSNT_03746___ 221 CCACTTTTGAGCTGGGTGTTGATTTTCTTCGTTCAGAAATTGAACGGACA 270
|.|||||||||||.||.||.||.||.||||||||.|||||||||||.|||
BPUM_2246___n 245 CGACTTTTGAGCTTGGCGTGGACTTCCTTCGTTCTGAAATTGAACGTACA 294
BSNT_03746___ 271 GCGGCCATCGGAGCGAAGCAAATTGTCCTTCATCCTGGTGCTCACGTAGG 320
|..||..|.||.||||.|||||||||.||.||.||.|||||.||.||.||
BPUM_2246___n 295 GAAGCGCTAGGTGCGAGGCAAATTGTTCTCCACCCGGGTGCACATGTCGG 344
BSNT_03746___ 321 GGCAGGAGCTGAAGCCGGCATCAAAAAAATTATTGAAGGCTTAAATGAAG 370
.||||||.|.|||||.||.|||.|||||||.||||||||||||||.||||
BPUM_2246___n 345 AGCAGGACCAGAAGCGGGAATCCAAAAAATCATTGAAGGCTTAAACGAAG 394
BSNT_03746___ 371 TGATTGATCCGAA-----TCAAAATGTCCAGATTGCATTAGAAACAATGG 415
|.|| ||.| .|||||.||.||.||||||.|.||.|||||||
BPUM_2246___n 395 TCAT-----CGTAAAAGGGCAAAAGGTTCAAATTGCACTTGAGACAATGG 439
BSNT_03746___ 416 CTGGAAAAGGATCGGAATGCGGCAGAAGCTTTGAGGAGCTTGCACAGATT 465
||||.||||||||.||||||||.|||||||||||.||||||||.||.|||
BPUM_2246___n 440 CTGGCAAAGGATCAGAATGCGGAAGAAGCTTTGAAGAGCTTGCCCAAATT 489
BSNT_03746___ 466 ATCGAAGGCGTTACACACAATG-AGCAGCTGTCAGTGTGCTTTGACACGT 514
|||||.||.||.|||||.||.| |||| ||.||.||.||||||||.||||
BPUM_2246___n 490 ATCGACGGAGTGACACATAACGAAGCA-CTTTCTGTCTGCTTTGATACGT 538
BSNT_03746___ 515 GCCATACACATGATGCCGGGTATAACATTGTCGA-AGACTTTGACGGAGT 563
|.||.|||||.|||||.||.|||...||||| || .||||||||.||.||
BPUM_2246___n 539 GTCACACACACGATGCTGGTTATCCGATTGT-GACTGACTTTGATGGGGT 587
BSNT_03746___ 564 GCT-GAACGAGTTCGATAAAATCATTGGCATTGACCGTATTAAAGTGCTT 612
|.| ||| ||.||.|||..||||||.||.||||||||.||.||.||.|||
BPUM_2246___n 588 GTTAGAA-GAATTTGATCGAATCATCGGTATTGACCGAATCAAGGTTCTT 636
BSNT_03746___ 613 CATATCAATGACAGCAAAAATGTCAAAGGTGCGAGAAAAGACCGCCATGA 662
|||||.|||||.||.|||||.||..||||.||.|||||||||||.|||||
BPUM_2246___n 637 CATATTAATGATAGTAAAAACGTACAAGGCGCAAGAAAAGACCGACATGA 686
BSNT_03746___ 663 AAATATTGGCTTTGGTGAAATAGGTTTTGACGCACTG--CAATATGTTGT 710
||||||.||||||||||||||.||.||.||.|||||| ||||| ||||
BPUM_2246___n 687 AAATATCGGCTTTGGTGAAATTGGCTTCGATGCACTGAACAATA--TTGT 734
BSNT_03746___ 711 TCACCATGAGCAGTTAAAAGACATTCCAAAAATTCTT-GAAACACCATAC 759
.||.|||..||||.|..||||..|.||||||| |||| |||||.||.||.
BPUM_2246___n 735 GCATCATCCGCAGCTTCAAGATGTGCCAAAAA-TCTTAGAAACGCCTTAT 783
BSNT_03746___ 760 GTCGGTGAAGATAAAAAGAACAAAAAACCGCCATACCGTTTTGAGATTGA 809
||.||||||||||||||||||||||||||.||.|||...||.||.||||.
BPUM_2246___n 784 GTAGGTGAAGATAAAAAGAACAAAAAACCACCTTACAAATTCGAAATTGC 833
BSNT_03746___ 810 AATGCTGAAAGAAAAACAATTTGATGATACATTGCTCGAAAAGATTTTAC 859
.|||||.||||||||.|||||||||||....||.||.||.||.|||..|.
BPUM_2246___n 834 GATGCTAAAAGAAAAGCAATTTGATGAAGGCTTACTAGATAAAATTAAAG 883
BSNT_03746___ 860 AGCAATAA 867
|.||.|||
BPUM_2246___n 884 ATCAGTAA 891
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