Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03746 and BPUM_2246

See Amino acid alignment / Visit BSNT_03746 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:17
# Commandline: needle
#    -asequence dna-align/BSNT_03746___yqfS.1.24716.seq
#    -bsequence dna-align/BPUM_2246___nfo.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03746___yqfS-BPUM_2246___nfo.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03746___yqfS-BPUM_2246___nfo.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03746___yqfS
# 2: BPUM_2246___nfo
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 908
# Identity:     689/908 (75.9%)
# Similarity:   689/908 (75.9%)
# Gaps:          58/908 ( 6.4%)
# Score: 2622.5
# 
#
#=======================================

BSNT_03746___      1 ------------------------ATGAGCGGAAAACATATGCTTCTGGC     26
                                             |||||||||||||||||||||||.||
BPUM_2246___n      1 TTGAAGATTGGTTCACATGTATCCATGAGCGGAAAACATATGCTTCTTGC     50

BSNT_03746___     27 TGCAAGCCAGGAAGCAGTCTCTTATGGGGCGAATACGTTTATGATCTATA     76
                     .||.||.||.|||||.|.|||||||||..||||||||||||||||.||||
BPUM_2246___n     51 AGCGAGTCAAGAAGCTGCCTCTTATGGTTCGAATACGTTTATGATTTATA    100

BSNT_03746___     77 CAGGCGCACCGCAAAATACGCGCCGAAAGAAAATTGAAGACTTAAATATA    126
                     ||||.||||||||||||||||||||.||.||||||||||||.|.|||||.
BPUM_2246___n    101 CAGGTGCACCGCAAAATACGCGCCGTAAAAAAATTGAAGACCTCAATATT    150

BSNT_03746___    127 GAAGCAGGCCGGGCACATATGCAAGAAAACGGCAT----TGAC-GAGATT    171
                     |||||.||.|..||.||||||.||||     ||||    |||| ||.||.
BPUM_2246___n    151 GAAGCTGGACAAGCGCATATGAAAGA-----GCATGGTATGACAGATATC    195

BSNT_03746___    172 ATCGTACACGCGCCTTATATTATTAATATTGGCAACA-CGACAAATCCGT    220
                     .||||.||.||.||.|||||||||||||||||.|||| ||.| |||||..
BPUM_2246___n    196 GTCGTCCATGCACCATATATTATTAATATTGGGAACACCGTC-AATCCTG    244

BSNT_03746___    221 CCACTTTTGAGCTGGGTGTTGATTTTCTTCGTTCAGAAATTGAACGGACA    270
                     |.|||||||||||.||.||.||.||.||||||||.|||||||||||.|||
BPUM_2246___n    245 CGACTTTTGAGCTTGGCGTGGACTTCCTTCGTTCTGAAATTGAACGTACA    294

BSNT_03746___    271 GCGGCCATCGGAGCGAAGCAAATTGTCCTTCATCCTGGTGCTCACGTAGG    320
                     |..||..|.||.||||.|||||||||.||.||.||.|||||.||.||.||
BPUM_2246___n    295 GAAGCGCTAGGTGCGAGGCAAATTGTTCTCCACCCGGGTGCACATGTCGG    344

BSNT_03746___    321 GGCAGGAGCTGAAGCCGGCATCAAAAAAATTATTGAAGGCTTAAATGAAG    370
                     .||||||.|.|||||.||.|||.|||||||.||||||||||||||.||||
BPUM_2246___n    345 AGCAGGACCAGAAGCGGGAATCCAAAAAATCATTGAAGGCTTAAACGAAG    394

BSNT_03746___    371 TGATTGATCCGAA-----TCAAAATGTCCAGATTGCATTAGAAACAATGG    415
                     |.||     ||.|     .|||||.||.||.||||||.|.||.|||||||
BPUM_2246___n    395 TCAT-----CGTAAAAGGGCAAAAGGTTCAAATTGCACTTGAGACAATGG    439

BSNT_03746___    416 CTGGAAAAGGATCGGAATGCGGCAGAAGCTTTGAGGAGCTTGCACAGATT    465
                     ||||.||||||||.||||||||.|||||||||||.||||||||.||.|||
BPUM_2246___n    440 CTGGCAAAGGATCAGAATGCGGAAGAAGCTTTGAAGAGCTTGCCCAAATT    489

BSNT_03746___    466 ATCGAAGGCGTTACACACAATG-AGCAGCTGTCAGTGTGCTTTGACACGT    514
                     |||||.||.||.|||||.||.| |||| ||.||.||.||||||||.||||
BPUM_2246___n    490 ATCGACGGAGTGACACATAACGAAGCA-CTTTCTGTCTGCTTTGATACGT    538

BSNT_03746___    515 GCCATACACATGATGCCGGGTATAACATTGTCGA-AGACTTTGACGGAGT    563
                     |.||.|||||.|||||.||.|||...||||| || .||||||||.||.||
BPUM_2246___n    539 GTCACACACACGATGCTGGTTATCCGATTGT-GACTGACTTTGATGGGGT    587

BSNT_03746___    564 GCT-GAACGAGTTCGATAAAATCATTGGCATTGACCGTATTAAAGTGCTT    612
                     |.| ||| ||.||.|||..||||||.||.||||||||.||.||.||.|||
BPUM_2246___n    588 GTTAGAA-GAATTTGATCGAATCATCGGTATTGACCGAATCAAGGTTCTT    636

BSNT_03746___    613 CATATCAATGACAGCAAAAATGTCAAAGGTGCGAGAAAAGACCGCCATGA    662
                     |||||.|||||.||.|||||.||..||||.||.|||||||||||.|||||
BPUM_2246___n    637 CATATTAATGATAGTAAAAACGTACAAGGCGCAAGAAAAGACCGACATGA    686

BSNT_03746___    663 AAATATTGGCTTTGGTGAAATAGGTTTTGACGCACTG--CAATATGTTGT    710
                     ||||||.||||||||||||||.||.||.||.||||||  |||||  ||||
BPUM_2246___n    687 AAATATCGGCTTTGGTGAAATTGGCTTCGATGCACTGAACAATA--TTGT    734

BSNT_03746___    711 TCACCATGAGCAGTTAAAAGACATTCCAAAAATTCTT-GAAACACCATAC    759
                     .||.|||..||||.|..||||..|.||||||| |||| |||||.||.||.
BPUM_2246___n    735 GCATCATCCGCAGCTTCAAGATGTGCCAAAAA-TCTTAGAAACGCCTTAT    783

BSNT_03746___    760 GTCGGTGAAGATAAAAAGAACAAAAAACCGCCATACCGTTTTGAGATTGA    809
                     ||.||||||||||||||||||||||||||.||.|||...||.||.||||.
BPUM_2246___n    784 GTAGGTGAAGATAAAAAGAACAAAAAACCACCTTACAAATTCGAAATTGC    833

BSNT_03746___    810 AATGCTGAAAGAAAAACAATTTGATGATACATTGCTCGAAAAGATTTTAC    859
                     .|||||.||||||||.|||||||||||....||.||.||.||.|||..|.
BPUM_2246___n    834 GATGCTAAAAGAAAAGCAATTTGATGAAGGCTTACTAGATAAAATTAAAG    883

BSNT_03746___    860 AGCAATAA    867
                     |.||.|||
BPUM_2246___n    884 ATCAGTAA    891


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