Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00507 and BPUM_2243
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:19
# Commandline: needle
# -asequence dna-align/BSNT_00507___ycdI.1.24716.seq
# -bsequence dna-align/BPUM_2243___ycdI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00507___ycdI-BPUM_2243___ycdI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00507___ycdI-BPUM_2243___ycdI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00507___ycdI
# 2: BPUM_2243___ycdI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 935
# Identity: 416/935 (44.5%)
# Similarity: 416/935 (44.5%)
# Gaps: 397/935 (42.5%)
# Score: 749.0
#
#
#=======================================
BSNT_00507___ 1 ATG--------AATCTCGTCTCATTGAAA-----GATATCGTTTTCGGCT 37
||| || |.||||||| ||.| ||||| |
BPUM_2243___y 1 ATGGCAAAGCCAA-------TTATTGAAATGAAGGACA----TTTCG--T 37
BSNT_00507___ 38 ATTCCCAT--ACGCCTGTTTTAGATAAA-GT-----ATCACTTGAT--AT 77
|.||..|| || |||.||| || ||||| || ||
BPUM_2243___y 38 ACTCGTATGGAC---------AGAGAAATGTCATAGATCAC---ATTCAT 75
BSNT_00507___ 78 TGAAAGCGGT-GAG----------TTC--------GTCGGCATCACTGGG 108
|.|| |.|| ||| ||| || |||.
BPUM_2243___y 76 TTAA--CAGTAGAGGAAGGGAACTTTCTAGCGCTTGT---------TGGA 114
BSNT_00507___ 109 CCAAACGGCGCCTCTAAATCGACGCTCATAAAGGTAATGC-----TGGGC 153
||.||.||..|...||||.|.|| ||.||.|| ||||| |||||
BPUM_2243___y 115 CCGAATGGATCTGGTAAAACAAC-CTTATTAA---AATGCCTGCTTGGGC 160
BSNT_00507___ 154 ATGCTGAAACCGTGGGAAGGCACAGTGACGATCAGTAAAA------GGAA 197
|..|.|||||...|.|||| ||| |.||||| ||.|
BPUM_2243___y 161 -TCATTAAACCACAGCAAGG--------CGA--ATTAAAACTATTTGGCA 199
BSNT_00507___ 198 ----------------TACAGAAGGGAAACGCCTGACC--ATAGGGTACG 229
||.|||..|| |||| ||.||.|..|
BPUM_2243___y 200 CGCCTGCTTCTAAATTTAAAGACTGG--------GACCAAATTGGATTTG 241
BSNT_00507___ 230 TCCCGCA----GCAAATTTCTTCA--TTTAATGCCGGCTTTCCGAGCACG 273
|..|.|| ||.||| | ||||||.|.||.|||||
BPUM_2243___y 242 TTTCTCAAAAGGCGAAT------AGTTTTAATACAGGTTTTCC------- 278
BSNT_00507___ 274 GTGCTGGAGCT-TGTT----CAGTCAGGCCGCTATACAAAAG-------- 310
|||| | |||| .|||| |.||| |||
BPUM_2243___y 279 -TGCT-----TCTGTTTACGAAGTC--GTCGC-------AAGTGGATTGA 313
BSNT_00507___ 311 ----GGAAATGG-----TTTAAACGTTTAAATGAAGAAGATCATCTTGAA 351
|.||||.| |||||||| |||||..|| |.|
BPUM_2243___y 314 CGGCGAAAATAGGATTATTTAAACG----AATGAGCAA---------GCA 350
BSNT_00507___ 352 GTAGAAAAAGCACTGAAAATGGTGGAAATGTGGGA---GCTCCGT----- 393
|.|.|||..|| ||.|.|.||| ||..| ||||.||
BPUM_2243___y 351 GGACAAATGGC-----AAGTTGAGGA----TGCCATTCGCTCAGTTGGGA 391
BSNT_00507___ 394 --------------CATCGTAAAATCGGTGATTTATCAGGCGGACAGAAA 429
||||..||.||.||.||..|.||||||||.||..|.
BPUM_2243___y 392 TACAAGATTTGAAGCATCAAAACATTGGGGAACTTTCAGGCGGTCAACAG 441
BSNT_00507___ 430 CAGAAAATCTGTATCGCCAGAATGCTCGCCAG-CAACCCGGATCTGCTGA 478
|||...|.||.|||.|||.|...|||||.||| ||.||| .|.|||||.|
BPUM_2243___y 442 CAGCGTACCTTTATTGCCCGTGCGCTCGTCAGTCAGCCC-AAGCTGCTTA 490
BSNT_00507___ 479 TGCTGGACGAACCGACGACAGCTGTTG----ATTAC-----GACAGCAGA 519
|..|.||.|||||.||| |||| | .|| |||||.||
BPUM_2243___y 491 TCTTAGATGAACCAACG------GTTGGGGTA-GACCAGCGGACAGTAG- 532
BSNT_00507___ 520 AAAGGATTTTACGAATTTATGCATCACCTTGT-GAAAAATCACAACCGCA 568
||||.|||| ||||.||..| ||||.||.|.| ||
BPUM_2243___y 533 -AAGGCTTTT------------ATCAGCTGCTAGAAACATTAAA----CA 565
BSNT_00507___ 569 CAG-------------TTGTGA---TGGTTACTCACGAACAAAACGAAGT 602
.|| || |.| |.||.||.|||| |||..|
BPUM_2243___y 566 AAGAAAAAGGAATGTCTT-TAATTCTCGTCACACACG------ACGTGG- 607
BSNT_00507___ 603 ACAGCAAT-TTTTAGATAAAGT----------GATTCGATTA---GAGAG 638
|||.| |||..|||||||| |.|| |.||| .|||.
BPUM_2243___y 608 ---GCACTGTTTCTGATAAAGTCACCCATGTGGCTT-GCTTAAATCAGAC 653
BSNT_00507___ 639 A------------GGAGAAAAAGGCGGATG--GAAATGTTTGACT---TG 671
| ||| |||| ||||.||||||.| ||
BPUM_2243___y 654 ACTTCATTTCCACGGA----------GATGCAGAAACGTTTGATTCAATG 693
BSNT_00507___ 672 GAAT--TCATGCG-------------ACGAGCTT----TTCTAG------ 696
| || |||.||| |||..|.| |||.||
BPUM_2243___y 694 G-ATGATCAAGCGCTATCCCAATTTTACGGACATGACATTCAAGTGATTC 742
BSNT_00507___ 696 ----------------------------------- 696
BPUM_2243___y 743 ATCACGATCATCACCATCATGGGGGACATGAATAA 777
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