Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00509 and BPUM_2242
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:19
# Commandline: needle
# -asequence dna-align/BSNT_00509___yceA.1.24716.seq
# -bsequence dna-align/BPUM_2242___yceA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00509___yceA-BPUM_2242___yceA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00509___yceA-BPUM_2242___yceA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00509___yceA
# 2: BPUM_2242___yceA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1036
# Identity: 500/1036 (48.3%)
# Similarity: 500/1036 (48.3%)
# Gaps: 368/1036 (35.5%)
# Score: 964.5
#
#
#=======================================
BSNT_00509___ 1 ATGGAAATG------------TTTGACTTGGAATTC-------ATGCGAC 31
||| |||.|.|..|||||| |||||
BPUM_2242___y 1 ------ATGCTATTTCCATTTTTTCATTATGAATTCTTACAAAATGCG-- 42
BSNT_00509___ 32 GAGCTTTTCTAGCAGGCGGCA----TGATCGCCGTCATGGCTCCGATACT 77
|||.|.||||| | ||||.|.|.|.||.||.||..||||
BPUM_2242___y 43 -----TTTATCGCAGG----AATGCTGATTGGCTTTATTGCGCCCTTACT 83
BSNT_00509___ 78 AGGAGTGTATCTCGTTCTCAGAAGACAGGCCT----TAATGGCTGACACA 123
.||.||.|.|.||||..|.||| ||||.| |.||.||.|||.|.
BPUM_2242___y 84 TGGTGTATTTATCGTCGTGAGA----AGGCTTTCGCTGATTGCAGACGCC 129
BSNT_00509___ 124 CT--TTCACATATCTCATTGTCAGGTGTTGCCATCGGCTTTTTTC----- 166
|| .||||.||||.| ||| |.|||.||| ||.|...|||.|||
BPUM_2242___y 130 CTCAGTCACGTATCAC-TTG-CCGGTATTG-CAGCAAGTTTATTCCTTGA 176
BSNT_00509___ 167 --------TCAGCACCAATATAACCGCAGCAAGC-----ATAGTCGTCGT 203
||.||..| .|.||.|.||..||| ||| |.|.|.
BPUM_2242___y 177 TAAAAAGTTCGGCCTC---TTGACAGGAGTGAGCCCGCTATA--CTTAGG 221
BSNT_00509___ 204 GACCATCGGCG----------------CGATCGGAATTGAATACATGCGG 237
|| .|||| ||.|....||||||..|.||||.
BPUM_2242___y 222 GA----TGGCGTTTTCTGTTGCAGGTTCGTTATTTATTGAACGCCTGCGA 267
BSNT_00509___ 238 CGGGCGTATCGGACTTATTCA-GAAGTGTCCATTGCCATCTTA----ATG 282
...|.||||..|..||| ||| |||.||.|.|| ||.|.||| ||
BPUM_2242___y 268 TCTGTGTATAAGCATTA-TCAGGAACTGGCGAT--CCCTATTATTTTAT- 313
BSNT_00509___ 283 GCAGCTGGT-TTG-----TCCTTCGCGATGTTTTTAATCAGCCTTTCCAA 326
|||.|||| ||| |||.|| |||..|.|||
BPUM_2242___y 314 -CAGGTGGTATTGGGATTTCCGTC------------ATCTTCATTT---- 346
BSNT_00509___ 327 AGGCAC-AGCCAATATGAGCATTGATCAATACCTATTTG----------- 364
||| |||.||| .||.|| |||||..|||||
BPUM_2242___y 347 ---CACTAGCGAAT---GGCTTT----AATACAGATTTGTTTAGTTATTT 386
BSNT_00509___ 365 GATCGCTTGTGACAGTAAACCAGCAGCAG-GTCTATATTA----TCAGTA 409
|.|||...|||.|||| ||.| |||.|.|||| |..|.|
BPUM_2242___y 387 GTTCGGAAGTGTCAGT---------GCGGTGTCAAGATTAGATCTTTGGA 427
BSNT_00509___ 410 TT---------ATCACACT-------------GCTGATCCTGCT------ 431
|| |||.|||| |.|| ||.||||
BPUM_2242___y 428 TTGTTGTTGGGATCTCACTTATTGTGGTGTTAGTTG-TCGTGCTTTTATA 476
BSNT_00509___ 432 -------TTATTTTATCGTACTGAGAAGGCCGCTCTACCTGCTGACGTTT 474
||||||| |||.|.|| |||
BPUM_2242___y 477 TAAAGAATTATTTT---------------------TACTTTCT----TTT 501
BSNT_00509___ 475 GATGAAGCAACA-GCCAAAACATCGGGAATCAATAC----AAACG--TTC 517
||||||| |.|| ||.||..|.||.||.|| |.| |||.| |||
BPUM_2242___y 502 GATGAAG-AGCATGCAAAGGCTTCTGGTAT---TTCAGCGAAATGGATTC 547
BSNT_00509___ 518 -TCTCGTTGTCAT-TCAGTATTGTCACAGGCCTTGCGATTTCAGTCATTA 565
|.|..||.|||| |.|| |||||.|| ||||..|||.| |.|||
BPUM_2242___y 548 ATTTTATTTTCATCTTAG--TTGTCGCA---CTTGTCATTGC-GGCAT-- 589
BSNT_00509___ 566 TTCCGAT---CATCG-GGGT--CCTTCTTGTATCAGCCCTGC-------- 601
|||| .|||| .||| .||.|||||.||.||.|| |
BPUM_2242___y 590 ---CGATGCGTATCGTAGGTACACTGCTTGTCTCTGCGCT-CATGACACT 635
BSNT_00509___ 602 TCGTATTGCCGGC-AGCATTCGCCATCAGAATTGCAAAAGGCTTTAACAT 650
||.|.||| |||| ||.||.||| |||||.||||||||.||
BPUM_2242___y 636 TCCTGTTG-CGGCAAGTATCCGC-------ATTGCCAAAGGCTTCAA--- 674
BSNT_00509___ 651 GGTTTTCATTACA-GCCATACTCATTTCG---TTATTCAGCGTATTTACG 696
||| ||.||..||.||||| ||.|||.|.|.|||..|.
BPUM_2242___y 675 ----------ACAGGCGATCTTCCTTTCGATCTTGTTCGGTGAATTGTCT 714
BSNT_00509___ 697 GGACTGACA----TCATC-----CTATCAGCTCG-----GGACGCCGCCA 732
|.|.||.|| |.||| ||||.|.||.| | |||||
BPUM_2242___y 715 GTATTGGCAGGGTTGATCTTAAGCTATTACCTAGATTTAG-----CGCCA 759
BSNT_00509___ 733 GGTCCG--TCTATTACCCTGCTATTGATTGTTTTGCTATTAATCGGATTT 780
|| || .|.|||....||||.|..| |||||.|.||||||||||.|
BPUM_2242___y 760 GG--CGGAACCATTGTGATGCTGTCCA---TTTTGATTTTAATCGGATGT 804
BSNT_00509___ 781 -----------GCAGTTCA-----GGGAGT----TTGGACGTTTATCAAA 810
|.|.|||| ||||.| .||.|||| |
BPUM_2242___y 805 ATTTTTATTGGGAAATTCAAAAGGGGGAATCATCATGAACGT-------A 847
BSNT_00509___ 811 AAAGAAGC---TCAGCGCAAAAAAAGGCATCGATAA 843
.||||||| |.|
BPUM_2242___y 848 CAAGAAGCGCTTGA---------------------- 861
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