Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03740 and BPUM_2236
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:16
# Commandline: needle
# -asequence dna-align/BSNT_03740___yqfX.1.24716.seq
# -bsequence dna-align/BPUM_2236___yqfX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03740___yqfX-BPUM_2236___yqfX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03740___yqfX-BPUM_2236___yqfX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03740___yqfX
# 2: BPUM_2236___yqfX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 504
# Identity: 253/504 (50.2%)
# Similarity: 253/504 (50.2%)
# Gaps: 168/504 (33.3%)
# Score: 689.5
#
#
#=======================================
BSNT_03740___ 1 TTGACATTAACAGAAAAGTTTAGCAAACATGAATCAGGCAAAATGGATCA 50
||||
BPUM_2236___y 1 ------------------------------------------ATGG---- 4
BSNT_03740___ 51 AACTATAAAAGCTCCTTTAATAAAACAGAAGGGGGAATT---GAAGGTGG 97
|||| |.|| |||| ||| ||||
BPUM_2236___y 5 -------AAAG-----------AGAC-GAAG-----ATTTCAGAAG---- 26
BSNT_03740___ 98 CAAACGATTACGAAAAGCGTGATAACAACAGTTACTATGTTGATCATGGA 147
|||.||| |||||.|.|.|||...||| ||..|.|||
BPUM_2236___y 27 -AAATGAT---------CGTGAAATCGACACACACT---TTAGTAATG-- 61
BSNT_03740___ 148 TCTGAAGGGACAAATATTACCCGCGACAATGACGGTTTTTTTGAGGAAAC 197
||||.||.|.|.|.||||||||
BPUM_2236___y 62 ----------------------------ATGATGGCTATCTAGAGGAAAC 83
BSNT_03740___ 198 AGCTGCTGAAATCGCAGAGCCTTATCGTGCTGCTGACCGCAGCAATGACC 247
||||||||||||.||||||||.||||..||| .|
BPUM_2236___y 84 AGCTGCTGAAATTGCAGAGCCATATCAGGCT-----------------TC 116
BSNT_03740___ 248 AAGACAATGATCGCAG-----CGACGGCAATGT---CAATGAAG--GACG 287
|||| ||||| || .||||..||.|| ||| |.|| ||||
BPUM_2236___y 117 AAGA----GATCG-AGTAGATAGACGAGAACGTGACCAA-GTAGGTGACG 160
BSNT_03740___ 288 -------------GGGAATAGGATATATCGCTTTAGC-CTTGTCCATCAT 323
|||.|||||.||||..||..|.|| .||| |.||.||
BPUM_2236___y 161 ATTCAGGCAGTAAGGGGATAGGCTATACAGCCCTCGCGATTG-CGATTAT 209
BSNT_03740___ 324 TTCATTGTTTGTACTGCCTGTTTTATTGGGAGCTGCCGGTATTATTGTCG 373
.||.||.|||||..||||.||..||||.||||..||.|..||..|.||.|
BPUM_2236___y 210 CTCGTTATTTGTCTTGCCGGTGCTATTAGGAGTAGCGGCAATCGTCGTTG 259
BSNT_03740___ 374 GCTATATCGCAAGAAGAAGAGGTGCTCAAGGCCTTGGAGCCTGGGCAATG 423
|.|||||.||||||||||.|||.||.||.|..|||||.||.|||.||||.
BPUM_2236___y 260 GTTATATTGCAAGAAGAAAAGGAGCACATGCGCTTGGCGCATGGTCAATC 309
BSNT_03740___ 424 GGTATCGGTGTCGTTTCATTAGTGCTTGGAATATTTATTATTCCATTTTT 473
||.|||||..|.|||||..|..|.||.||.||||||||.|..||.||.||
BPUM_2236___y 310 GGGATCGGAATTGTTTCCGTCATCCTAGGCATATTTATCACCCCGTTCTT 359
BSNT_03740___ 474 CTAA 477
.|||
BPUM_2236___y 360 TTAA 363
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