Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03740 and BPUM_2236

See Amino acid alignment / Visit BSNT_03740 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:16
# Commandline: needle
#    -asequence dna-align/BSNT_03740___yqfX.1.24716.seq
#    -bsequence dna-align/BPUM_2236___yqfX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03740___yqfX-BPUM_2236___yqfX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03740___yqfX-BPUM_2236___yqfX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03740___yqfX
# 2: BPUM_2236___yqfX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 504
# Identity:     253/504 (50.2%)
# Similarity:   253/504 (50.2%)
# Gaps:         168/504 (33.3%)
# Score: 689.5
# 
#
#=======================================

BSNT_03740___      1 TTGACATTAACAGAAAAGTTTAGCAAACATGAATCAGGCAAAATGGATCA     50
                                                               ||||    
BPUM_2236___y      1 ------------------------------------------ATGG----      4

BSNT_03740___     51 AACTATAAAAGCTCCTTTAATAAAACAGAAGGGGGAATT---GAAGGTGG     97
                            ||||           |.|| ||||     |||   ||||    
BPUM_2236___y      5 -------AAAG-----------AGAC-GAAG-----ATTTCAGAAG----     26

BSNT_03740___     98 CAAACGATTACGAAAAGCGTGATAACAACAGTTACTATGTTGATCATGGA    147
                      |||.|||         |||||.|.|.|||...|||   ||..|.|||  
BPUM_2236___y     27 -AAATGAT---------CGTGAAATCGACACACACT---TTAGTAATG--     61

BSNT_03740___    148 TCTGAAGGGACAAATATTACCCGCGACAATGACGGTTTTTTTGAGGAAAC    197
                                                 ||||.||.|.|.|.||||||||
BPUM_2236___y     62 ----------------------------ATGATGGCTATCTAGAGGAAAC     83

BSNT_03740___    198 AGCTGCTGAAATCGCAGAGCCTTATCGTGCTGCTGACCGCAGCAATGACC    247
                     ||||||||||||.||||||||.||||..|||                 .|
BPUM_2236___y     84 AGCTGCTGAAATTGCAGAGCCATATCAGGCT-----------------TC    116

BSNT_03740___    248 AAGACAATGATCGCAG-----CGACGGCAATGT---CAATGAAG--GACG    287
                     ||||    ||||| ||     .||||..||.||   ||| |.||  ||||
BPUM_2236___y    117 AAGA----GATCG-AGTAGATAGACGAGAACGTGACCAA-GTAGGTGACG    160

BSNT_03740___    288 -------------GGGAATAGGATATATCGCTTTAGC-CTTGTCCATCAT    323
                                  |||.|||||.||||..||..|.|| .||| |.||.||
BPUM_2236___y    161 ATTCAGGCAGTAAGGGGATAGGCTATACAGCCCTCGCGATTG-CGATTAT    209

BSNT_03740___    324 TTCATTGTTTGTACTGCCTGTTTTATTGGGAGCTGCCGGTATTATTGTCG    373
                     .||.||.|||||..||||.||..||||.||||..||.|..||..|.||.|
BPUM_2236___y    210 CTCGTTATTTGTCTTGCCGGTGCTATTAGGAGTAGCGGCAATCGTCGTTG    259

BSNT_03740___    374 GCTATATCGCAAGAAGAAGAGGTGCTCAAGGCCTTGGAGCCTGGGCAATG    423
                     |.|||||.||||||||||.|||.||.||.|..|||||.||.|||.||||.
BPUM_2236___y    260 GTTATATTGCAAGAAGAAAAGGAGCACATGCGCTTGGCGCATGGTCAATC    309

BSNT_03740___    424 GGTATCGGTGTCGTTTCATTAGTGCTTGGAATATTTATTATTCCATTTTT    473
                     ||.|||||..|.|||||..|..|.||.||.||||||||.|..||.||.||
BPUM_2236___y    310 GGGATCGGAATTGTTTCCGTCATCCTAGGCATATTTATCACCCCGTTCTT    359

BSNT_03740___    474 CTAA    477
                     .|||
BPUM_2236___y    360 TTAA    363


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.