Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03739 and BPUM_2235

See Amino acid alignment / Visit BSNT_03739 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:16
# Commandline: needle
#    -asequence dna-align/BSNT_03739___ispG.1.24716.seq
#    -bsequence dna-align/BPUM_2235___ispG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03739___ispG-BPUM_2235___ispG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03739___ispG-BPUM_2235___ispG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03739___ispG
# 2: BPUM_2235___ispG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1129
# Identity:     884/1129 (78.3%)
# Similarity:   884/1129 (78.3%)
# Gaps:          17/1129 ( 1.5%)
# Score: 3488.0
# 
#
#=======================================

BSNT_03739___      1 GTGAGTGAAATCACACATCGTACAAAAACGCGTCCCGTCAAAGTGGGACC     50
                     |||||||||.|||||||||||||.||||||||||||||||||||||||||
BPUM_2235___i      1 GTGAGTGAAGTCACACATCGTACTAAAACGCGTCCCGTCAAAGTGGGACC     50

BSNT_03739___     51 TTTAACAATAGGCGGCAACAATGAAGTTGTCATCCAAAGCATGACAACAA    100
                     ||||||.|||||.||.||.|||||.||||||||.|||||.|||.||||||
BPUM_2235___i     51 TTTAACTATAGGTGGAAATAATGAGGTTGTCATTCAAAGTATGGCAACAA    100

BSNT_03739___    101 CAAAAACACATGATGTAGAAGCAACGGTTGCGGAAATTAACCGTTTGGCT    150
                     |.||||||||||||||.|||||.||.||.||.||||||||.|||.|.|..
BPUM_2235___i    101 CCAAAACACATGATGTCGAAGCGACAGTAGCTGAAATTAAGCGTCTTGAA    150

BSNT_03739___    151 GAAGCCGGTTGCCAAATCGTTCGGGTAGCATGTCCGGATGAACGGGCAGC    200
                     |||||.||.||.||||||||.||.||.|||||.||.||.||.||.|||||
BPUM_2235___i    151 GAAGCAGGCTGTCAAATCGTGCGTGTCGCATGCCCAGACGAGCGTGCAGC    200

BSNT_03739___    201 AAACGCCATTGCGGATATTAAAAAGCGCATTTCCATTCCTCTTGTTGTTG    250
                     |||.||.|||||.||.||.|||||.|..||...|||.||.||||||||.|
BPUM_2235___i    201 AAATGCGATTGCAGACATAAAAAAACAAATCAACATCCCGCTTGTTGTCG    250

BSNT_03739___    251 ACATACATTTCGATTATAAACTTGCGTTGAAAGCCATTGAAGGCGGCGCA    300
                     |.||.|||||.||.||.||.|||||..|||||||.|||||||..||.|||
BPUM_2235___i    251 ATATTCATTTTGACTACAAGCTTGCACTGAAAGCGATTGAAGCAGGTGCA    300

BSNT_03739___    301 GATAAAATCCGCATCAACCCCGGCAACATCGGTCGACGTGAAAAAGTTGA    350
                     ||.|||||.||.|||||.||.||.||||||||..||||.||||||||.||
BPUM_2235___i    301 GACAAAATTCGAATCAATCCAGGGAACATCGGAAGACGAGAAAAAGTCGA    350

BSNT_03739___    351 AGCGGTTGTTAAAGCGGCCAAAGACAAAGGCATTCCGATCAGGATCGGAG    400
                     |||.|||||.|||||.||.|||||.|||||||||||.|||.|.||.||.|
BPUM_2235___i    351 AGCAGTTGTGAAAGCAGCAAAAGAAAAAGGCATTCCAATCCGTATTGGGG    400

BSNT_03739___    401 TAAACGCCGGTTCATTGGAAAAACGCATTTTAGAAAAATACGGTTATCCG    450
                     |||||||.||||||||.||.|||...|||.|.||.|||||||||||.||.
BPUM_2235___i    401 TAAACGCTGGTTCATTAGAGAAAAAAATTCTTGATAAATACGGTTACCCA    450

BSNT_03739___    451 ACTGCCGATGGAATGGTAGAAAGCGCACTTCATCACATTAAAATTCTTGA    500
                     ||.||.|||||.|||||.|||||.|||||.||.|||||||||||||||||
BPUM_2235___i    451 ACAGCAGATGGTATGGTTGAAAGTGCACTGCACCACATTAAAATTCTTGA    500

BSNT_03739___    501 GGATCTTGATTTTCACGATATTATTGTCAGCATGAAGGCCTCTGACGTGA    550
                     .|||||.||||||||.|||||.||.|||||||||||.||.|||||.||.|
BPUM_2235___i    501 AGATCTAGATTTTCATGATATCATCGTCAGCATGAAAGCATCTGATGTCA    550

BSNT_03739___    551 ACCTTGCAATCGAGGCTTATGAAAAAGCGGCGAAAGCGTTTGACTACCCG    600
                     ||||.||.||.|||||.|||||||||||.||.|||||.|||||||||||.
BPUM_2235___i    551 ACCTAGCGATTGAGGCATATGAAAAAGCAGCAAAAGCATTTGACTACCCT    600

BSNT_03739___    601 CTTCACCTCGGGATCACCGAGTCAGGAACGCTGTTTGCCGGCACAGTAAA    650
                     ||||||||.|||||.||.||.|||||.||..|.|||||.||.||.||.||
BPUM_2235___i    601 CTTCACCTTGGGATTACAGAATCAGGTACATTATTTGCAGGTACGGTCAA    650

BSNT_03739___    651 GAGCGCAGCAGGACTCGGCGCCATTTTAAGCAAAGGCATCGGGAACACCA    700
                     .||.|||||.||.||.||.||.||.||.|..|..||.||.||||||||..
BPUM_2235___i    651 AAGTGCAGCTGGTCTAGGTGCTATCTTGAATATGGGGATTGGGAACACAC    700

BSNT_03739___    701 TGCGCATTTCACTAAGCGCAGACCCTGTAGAAGAGGTAAAAGTAGCAAGG    750
                     |.|||||.|||.||||.||.||.||.||.|||||.||||||||||||.|.
BPUM_2235___i    701 TCCGCATCTCATTAAGTGCTGATCCAGTTGAAGAAGTAAAAGTAGCACGC    750

BSNT_03739___    751 GAGCTTCTGAAATC-TTTCGGCTTAGCCTCCAATGCTGCCACGCTCATCT    799
                     ||.||..||||||| |||.|.||| ||..|.|||||.||.||.||.||||
BPUM_2235___i    751 GAACTGTTGAAATCATTTGGTCTT-GCAGCAAATGCAGCAACACTGATCT    799

BSNT_03739___    800 CATGTCCGACTTGCGGCCGTATTGAGATTGATCTAATCAGCATTGCCAAT    849
                     |.||.||.|||||.||.||.||.||.|||||.||.||.||||||||.|||
BPUM_2235___i    800 CTTGCCCAACTTGTGGACGAATCGAAATTGACCTCATTAGCATTGCAAAT    849

BSNT_03739___    850 GAAGTGGAAGAGTATATTTCTAAGATAAAAGCGCCGATTAAAGTTGCTGT    899
                     |||||.|||||.|||||.||.|..||.|||||.|||||||||||.|||||
BPUM_2235___i    850 GAAGTCGAAGAATATATCTCCACAATTAAAGCACCGATTAAAGTAGCTGT    899

BSNT_03739___    900 TCTCGGCTGCGCTGTAAACGGACCTGGTGAAGCGAGAGAAGCTGATATCG    949
                     |||.|||||.||||||||.||.||.||.||||||.|.||||||||.||||
BPUM_2235___i    900 TCTTGGCTGTGCTGTAAATGGTCCAGGGGAAGCGCGTGAAGCTGACATCG    949

BSNT_03739___    950 GAATCGCCGGTGCACGCGGTGAAGGTCTGCTGTTCCGGAAAGGGAAAATT    999
                     ||||.|||||.||..|.||.||||||||..|||||||.|||||..|||||
BPUM_2235___i    950 GAATTGCCGGCGCTAGAGGCGAAGGTCTATTGTTCCGTAAAGGTGAAATT    999

BSNT_03739___   1000 GTCCGTAAGGTTCCAGAGGAAACGATGGTAGAAGAACTCAAAAAAGAAAT   1049
                     ||.|||||.||.|||||.|||||||||||.||||||||.|||||||||||
BPUM_2235___i   1000 GTTCGTAAAGTACCAGAAGAAACGATGGTTGAAGAACTGAAAAAAGAAAT   1049

BSNT_03739___   1050 TGACATTCTTGCTGAGGAACACTACGCAAAACTTGAAGCTGAAAAAGCAA   1099
                     .||.|...|||||||.||.|||||.||||||.|.||||||||||||||||
BPUM_2235___i   1050 CGATAAAATTGCTGAAGAGCACTATGCAAAAATGGAAGCTGAAAAAGCAA   1099

BSNT_03739___   1100 AATTAAAAGAAGAAACACAAAAAGCTTGA   1128
                     ||...||.|.|.||               
BPUM_2235___i   1100 AAGCCAACGCATAA---------------   1113


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