Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01985 and BPUM_2233
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:31
# Commandline: needle
# -asequence dna-align/BSNT_01985___yjcK.1.24716.seq
# -bsequence dna-align/BPUM_2233.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01985___yjcK-BPUM_2233.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01985___yjcK-BPUM_2233.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01985___yjcK
# 2: BPUM_2233
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 684
# Identity: 364/684 (53.2%)
# Similarity: 364/684 (53.2%)
# Gaps: 192/684 (28.1%)
# Score: 889.5
#
#
#=======================================
BSNT_01985___ 0 -------------------------------------------------- 0
BPUM_2233 1 GTGTCTTGTAATGAATTTACGTTCGGCGGTGCTTTATTAAGCATCTATCA 50
BSNT_01985___ 1 -----ATGTTAAAA-----------GGA------------AAAACC---- 18
|||.||||| ||| ||||.|
BPUM_2233 51 CGATTATGATAAAATAAGAACAGGGGGAGAGTTTTTGAAGAAAATCGGTC 100
BSNT_01985___ 19 -----ATTTATGTTAGACCTTTAGAAGTAACGGATGCCGAAGAAAAT--- 60
||.|||||.|||....||..||.||..||||| |.|||
BPUM_2233 101 AGCATATATATGTGAGAGTGCTAACAGAAAAAGATGC-----ACAATCAC 145
BSNT_01985___ 61 ---TTGCGGCTGCAAAGC--GAAAATCG-GGATTTTTTCGAACAATTT-- 102
||.|...|| ||| ||.||||| ...|.||||| |.||||||
BPUM_2233 146 TACTTACACTTG---AGCTTGAGAATCGCTCCTATTTTC-AGCAATTTAC 191
BSNT_01985___ 103 -TCTATGATACGCACAGACGATTACTATACGGTTG-AGGGGCAAAGAAAA 150
.||.||.| .|.||||||||..|..|| |||| ...|.||||...||
BPUM_2233 192 ACCTTTGGT---GAAAGACGATTTTTTCAC-GTTGTCTCGTCAAATTGAA 237
BSNT_01985___ 151 CGAAT--AACCGAGTATCAGGAAAGACTTGAGAAAGATGAAGAATAT--- 195
||||| |.|..|||.| |||||||...|.|.|.|||||||..|||
BPUM_2233 238 CGAATTCAGCGCAGTGT--GGAAAGATGCGCGCAGGATGAAGCCTATATG 285
BSNT_01985___ 196 CATTTTGGCATCT--TTACAGCGTCAGAC-GATAGATTAATCGGGACGGT 242
|| |||.||.| |||.| |.|.|| |||.|.|||||.|||||..|
BPUM_2233 286 CA---TGGTATTTTCTTAAA---TGAAACAGATGGCTTAATTGGGACAAT 329
BSNT_01985___ 243 TTCGCTCTTTCAAATC-----------ATCC-GTGGAGCGCTGCAAACT- 279
||||||.|..|| .||| ||.|||.| |.||
BPUM_2233 330 ----CTCTTTAAGTTCTGTCGTAAGAGGTCCGGTAGAGGG-----AGCTT 370
BSNT_01985___ 280 -GCGTTCATTGGGTATTT--TTTA-GACAAAGCCCATAAT-GGAAAGGAT 324
|| |.||||||.| ||.| || |||| |||..| |||||||.|
BPUM_2233 371 GGC-----TAGGGTATGTACTTGATGA-AAAG--CATGGTGGGAAAGGGT 412
BSNT_01985___ 325 ATTATGACAGAGGCAGTCAGATTGGTT-----GTTGATTATGCGTTCCAC 369
| |||||||||.|| .|||.||| .|.||||||||.||..|.
BPUM_2233 413 A-TATGACAGAAGC-----CATTCGTTTAATCATCGATTATGCTTTTGAT 456
BSNT_01985___ 370 GAATTGAAACTGCATCGGATTGAAGCCGGTGTGATGCCCCGTAATCTCGG 419
||..||.|.||||||||.||||||||.||.||.|.|||..|||||.|.||
BPUM_2233 457 GAGCTGCACCTGCATCGTATTGAAGCTGGAGTAAAGCCGAGTAATATAGG 506
BSNT_01985___ 420 GTCCATGCGTGTTTTAGAAAAAGCGGGATTTCATAAAGAAG----GCATC 465
.|||||.|||||..|.|||||..|.||.|||.|.||.||.| |.||
BPUM_2233 507 TTCCATTCGTGTGCTGGAAAAGACAGGTTTTGAAAATGAGGGACTGAAT- 555
BSNT_01985___ 466 GCCCGAAAAAATGTAAAAATTAATGGCGTTTGGGAGGATCATCAAGTCCT 515
||.|||||.|||||.|||||||.|||.|||||.||||||.|..|..|
BPUM_2233 556 ---CGTAAAAAAGTAAAGATTAATGACGTATGGGAAGATCATTATTTGTT 602
BSNT_01985___ 516 TGCGATTCTGAATCCTGATGACGAACAATAA--- 546
||||||..|..||||.|||| |||.|
BPUM_2233 603 TGCGATCATTCATCCGGATG------AATCATAG 630
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