Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03736 and BPUM_2232

See Amino acid alignment / Visit BSNT_03736 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:16
# Commandline: needle
#    -asequence dna-align/BSNT_03736___yqgB.1.24716.seq
#    -bsequence dna-align/BPUM_2232___yqgB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03736___yqgB-BPUM_2232___yqgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03736___yqgB-BPUM_2232___yqgB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03736___yqgB
# 2: BPUM_2232___yqgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 849
# Identity:     480/849 (56.5%)
# Similarity:   480/849 (56.5%)
# Gaps:         165/849 (19.4%)
# Score: 1144.0
# 
#
#=======================================

BSNT_03736___      1 GTGAATGTGTTTCAGCTTTTCATTAAAAGTACA--TACTCTCCCCGTGAT     48
                     .||||.||.||| |..||.|..||||||| .||  ||.||.||....|||
BPUM_2232___y      1 TTGAACGTATTT-AAATTATTGTTAAAAG-GCATTTATTCACCAAAAGAT     48

BSNT_03736___     49 ATTGCAAAAACAAGATTTCAAGGAATCGGAAAAGCGATTCTTTATGTATT     98
                     |||||.|||.||.|.|||..|||.||.||||||||.||  |||||..|||
BPUM_2232___y     49 ATTGCTAAAGCACGGTTTACAGGGATTGGAAAAGCAAT--TTTATTCATT     96

BSNT_03736___     99 TT--TGCTCTCTGTCCTGTTTGCAATCCCTACCGCTTATTATGTAAGTAC    146
                     ||  |.||.||..||.|....|||.|.|||...|.||||.||.|.||...
BPUM_2232___y     97 TTTATCCTTTCGATCATCGCAGCAGTTCCTCAGGGTTATCATATGAGCCA    146

BSNT_03736___    147 AGGGACCGTAAAAT-CAATGAACGGCTTTAAAACTGTTTTAAACAAAGAT    195
                     ||.||.| |.|||| |.|||...||.|||.|...|||..|.||.||||||
BPUM_2232___y    147 AGAGATC-TCAAATGCGATGTCAGGATTTCAGCATGTGATCAAAAAAGAT    195

BSNT_03736___    196 TTCCCTGATTTCACAATTTCAAACGGCAAACTTCAAACGGATGAGA----    241
                     ||.|||||||||.||||...|||.||.||.||||||.|||||.|.|    
BPUM_2232___y    196 TTACCTGATTTCTCAATCGAAAAAGGAAAGCTTCAAGCGGATCAAAGTGA    245

BSNT_03736___    242 --------AAAAAGCCACGGAATCTCAAGCAAATGG--TTTCGTTATCGT    281
                             ||||||            |||.|||.||  ||.||  |||.|
BPUM_2232___y    246 ACCGATAGAAAAAG------------AAGAAAACGGCATTACG--ATCTT    281

BSNT_03736___    282 GTTCGATCCGACAGACTCCTATGGCACTGAACAAA---------------    316
                     .||.|||||            ||   |||||.|||               
BPUM_2232___y    282 TTTTGATCC------------TG---CTGAAAAAATAAAAGCAAGTGAGC    316

BSNT_03736___    317 TTGAAGCAAAGCAAAACGCGATCGGCATCCTT--CAGAACAAATTTGTTT    364
                     |||||.|||||||||..||.||| ||||...|  .|||| |||...||..
BPUM_2232___y    317 TTGAATCAAAGCAAACGGCCATC-GCATTAATAAAAGAA-AAAGCAGTGA    364

BSNT_03736___    365 TGGCCATTGACGGACAA--GCCCAAGAAATGTCTTACTCAATGATGCCAT    412
                     |.|||||.||.||.|||  |.|  |||.||..|.|| |||  |.|||   
BPUM_2232___y    365 TTGCCATCGATGGGCAAATGAC--AGATATTCCGTA-TCA--GCTGC---    406

BSNT_03736___    413 CAGAGTT--------ACAGAAAAAAGATGTCATTGCAGGTTT---AAACC    451
                          ||        .|.||.||||||.|...||||..|..|   |||.|
BPUM_2232___y    407 -----TTGGTGGAACGCTGACAAAAGACGAACTTGCCCGCGTGACAAATC    451

BSNT_03736___    452 AAAATAAAGCGATGATTGT-------AACTGT-----------TCTCTCA    483
                     |.|||.|||||||.|||.|       |.||||           |||.|||
BPUM_2232___y    452 AGAATCAAGCGATTATTATCCCAGTCATCTGTGTGCTGCTATATCTATCA    501

BSNT_03736___    484 ------GATCTTATTTTTCTCGTAACAGCAGCGGGAAAATTT-ATTGAAG    526
                           |.|||.||.||        ||..|||  |.||.||| .|||   
BPUM_2232___y    502 ACTGCGGCTCTCATGTT--------CATTAGC--GCAACTTTCCTTG---    538

BSNT_03736___    527 TATCGTTTTTAGCGCTTATCGGGT-TAATCATTAA--GAATTCTCAGAAA    573
                        ||.|      ||||    ||| .|.|.|||||  |.||  .||..||
BPUM_2232___y    539 ---CGAT------GCTT----GGTACATTTATTAAACGCAT--GCAACAA    573

BSNT_03736___    574 AAACATTTATCCTATCATCAGCTCTGGAAGCTTTCTGCTTATTCCATCAC    623
                     |||.|..|.||||..||...|||.|||||.||.||||||||.||..||||
BPUM_2232___y    574 AAAGAGCTTTCCTTCCAAATGCTGTGGAAACTCTCTGCTTACTCACTCAC    623

BSNT_03736___    624 CCTTTCAACTGTATTCTTTACAATCATGCGGGCACTAGAAGCAACCGTAC    673
                     ..|..||||.||.||.||..|.||||||.|.|||.||.|..||.|.||..
BPUM_2232___y    624 ATTAACAACAGTCTTTTTCGCCATCATGAGCGCATTAAACACACCTGTTG    673

BSNT_03736___    674 CAAGTGAATTTTTGCTGAACTGGTTTGTCAATTTTGTCATCCTGTTTCTC    723
                     |.|.|..||||||..|.||.|||.|..|.||.|||.||.||.|.|..||.
BPUM_2232___y    674 CGAATTCATTTTTATTAAATTGGGTCATTAACTTTATCTTCTTATACCTT    723

BSNT_03736___    724 GTTTTAAAAGAGATTCCGTCCAAA---AAAGCTGCTGTATAA-------    762
                     |||.||||.||.||.||..|.|||   |||.|...||| |||       
BPUM_2232___y    724 GTTGTAAAGGAAATACCCGCTAAACATAAACCACTTGT-TAAAAATTAA    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03736 and BPUM_2232

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
